|
| Status |
Public on Aug 01, 2015 |
| Title |
SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers [next-generation sequencing] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
Development of an alternative method to ChIP for the identification of DNA bound by transcriptional complexes assayed using next-generation sequencing
|
| |
|
| Overall design |
Next-generation sequencing data from sites identified by different Notch complexes using SpDamID-seq and compared against FAIRE and ChIP data
|
| |
|
| Contributor(s) |
Kopan R, Hass M |
| Citation(s) |
26257285 |
| |
| Submission date |
Jun 29, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Raphael Kopan |
| E-mail(s) |
rafi.kopan@cchmc.org
|
| Organization name |
Cincinnati Children's Hospital Medical Center
|
| Department |
Developmental Biology
|
| Lab |
Kopan
|
| Street address |
3333 Burnet Avenue
|
| City |
Cincinnati |
| State/province |
OH |
| ZIP/Postal code |
45229 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (25)
|
|
| This SubSeries is part of SuperSeries: |
| GSE70402 |
SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers |
|
| Relations |
| BioProject |
PRJNA288531 |
| SRA |
SRP059962 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70387_MMD.nonZeroScore.bed.gz |
697.4 Kb |
(ftp)(http) |
BED |
| GSE70387_MPD.nonZeroScore.bed.gz |
407.2 Kb |
(ftp)(http) |
BED |
| GSE70387_NND.nonZeroScore.bed.gz |
453.4 Kb |
(ftp)(http) |
BED |
| GSE70387_NW1-3_Notch_Dependent_FAIRE.bed.gz |
36.8 Kb |
(ftp)(http) |
BED |
| GSE70387_NW1-3_Total_FAIRE.bed.gz |
283.5 Kb |
(ftp)(http) |
BED |
| GSE70387_mK4_N1_ChIP_vs_input_ratio_10_RepeatMasked.bed.gz |
339.3 Kb |
(ftp)(http) |
BED |
| GSE70387_medianNMD.nonZeroScore.bed.gz |
239.4 Kb |
(ftp)(http) |
BED |
| GSE70387_medianNPD.nonZeroScore.bed.gz |
318.6 Kb |
(ftp)(http) |
BED |
| GSE70387_medianNRD.nonZeroScore.bed.gz |
402.2 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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