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Series GSE70687 Query DataSets for GSE70687
Status Public on Jul 10, 2015
Title Gene expression in experimental aortic coarctation and repair: candidate genes for therapeutic intervention?
Organism Oryctolagus cuniculus
Experiment type Expression profiling by array
Summary The objective of the current investigation was to use microarray techniques to quantify differentially expressed genes (DEGs) in the upstream aorta subjected to high arterial BP after surgical induction of CoA, and restoration of normal arterial BP after its correction.
DEGs may offer additional insight into potential mechanisms of persistent CV morbidity despite successful surgical repair.
 
Overall design Male New Zealand white rabbits ~10 weeks old and weighing ~1.0 kg randomly underwent proximal dAo CoA. A 20 mmHg BP gradient was imposed using silk (permanent) or Vicryl (degradable) suture to mimic untreated CoA and surgically corrected CoA, respectively. Rabbits develop a pronounced stenosis and accompanying elevated BP as a stimulus for arterial remodeling within one week. Degradation of Vicryl suture in the corrected group restores aortic diameter close to normal, but with modest residual narrowing. Non-experimental rabbits were designated as a control group. This results in a statistically significant increase in mean, systolic and pulse BP proximal to the coarctation for CoA as compared to both control and corrected rabbits. A ~4 mm circumferential region from the proximal aorta between the coarctation site and left subclavian artery was excised at harvest (32 weeks of age) and frozen. Frozen samples (n=4/group) were shipped overnight to Arraystar, Inc (Rockville, MD) for microarray analysis.
 
Contributor(s) LaDisa JF, Eddinger TJ, Bozdag S, Olson J, Ramchandran R, Kersten J
Citation(s) 26207811
Submission date Jul 09, 2015
Last update date Oct 09, 2015
Contact name John LaDisa
E-mail(s) john.ladisa@marquette.edu
Phone 414-288-6739
Organization name Marquette University
Department Biomedical Engineering
Lab CV T.E.C. and MARVL
Street address 1637 West Wisconsin Ave
City Milwaukee
State/province Wisconsin
ZIP/Postal code 53233
Country USA
 
Platforms (1)
GPL13288 Agilent-020908 Oryctolagus cuniculus (Rabbit) Oligo Microarray (Probe Name version)
Samples (12)
GSM1816459 Control Sample 1
GSM1816460 Control Sample 2
GSM1816461 Control Sample 3
Relations
BioProject PRJNA289362

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70687_Differentially_Expressed_Genes.xls.gz 1.8 Mb (ftp)(http) XLS
GSE70687_Gene_Expression_Profiling_Data.xls.gz 10.8 Mb (ftp)(http) XLS
GSE70687_Human_orthologue_genes_2FC+.xlsx 226.4 Kb (ftp)(http) XLSX
GSE70687_RAW.tar 25.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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