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| Status |
Public on May 30, 2016 |
| Title |
Expression analysis of seeds and seedlings of tomato growing on regular MS medium or MS medium supplemented with Helical multi-walled carbon nanotubes (Helical MWCNTs) in concentration 25 ug/ml |
| Organism |
Solanum lycopersicum |
| Experiment type |
Expression profiling by array
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| Summary |
To investigate effects of Helical multi-walled carbon nanotubes (Helical MWCNTs) on total expression profile of tomato seeds and young sedlings we introduced Helical MWCNTs in MS agar medium in concentrationd of 25 ug/ml.
Objectives for this study included the identification of genes that were up or down-regulated at the transcriptional level in tomato seeds and seedlings in response to application of Helical MWCNTs
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| Overall design |
Tomato seeds (1 day after placement of medium) and 11-days old seedlings growing on regular MS agar medium or MS medium supplemented with Helical MWCNTs (25 ug/ml) were selected for RNA extraction and hybridization on Affymetrix microarrays.
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| Contributor(s) |
Khodakovskaya M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jul 13, 2015 |
| Last update date |
May 31, 2016 |
| Contact name |
Mariya Khodakovskaya |
| E-mail(s) |
m_khod@yahoo.com
|
| Organization name |
University of Arkansas at Little Rock
|
| Department |
Biology
|
| Street address |
2801 S. University Avenue
|
| City |
Little Rock |
| State/province |
AR |
| ZIP/Postal code |
72204 |
| Country |
USA |
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| Platforms (1) |
| GPL4741 |
[Tomato] Affymetrix Tomato Genome Array |
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| Samples (12)
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| GSM1820333 |
Seeds-Helical MWCNTs (25 ug/ml) rep.1 |
| GSM1820334 |
Seeds-Helical MWCNTs (25 ug/ml) rep.2 |
| GSM1820335 |
Seeds-Helical MWCNTs (25 ug/ml) rep.3 |
| GSM1820336 |
Seedlings -control rep.1 [re-analysis] |
| GSM1820337 |
Seedlings -control rep.2 [re-analysis] |
| GSM1820338 |
Seedlings -control rep.3 [re-analysis] |
| GSM1820339 |
Seedlings-Helical MWCNTs (25 ug/ml) rep.1 |
| GSM1820340 |
Seedlings-Helical MWCNTs (25 ug/ml) rep.2 |
| GSM1820341 |
Seedlings-Helical MWCNTs (25 ug/ml) rep.3 |
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| Relations |
| BioProject |
PRJNA289670 |
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