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Series GSE70881 Query DataSets for GSE70881
Status Public on Jul 14, 2015
Title Expression analysis of draculin (drl) expressing cells in embryonic zebrafish
Organism Danio rerio
Experiment type Expression profiling by array
Summary drl expression initiates during gastrulation and condenses as a band of cells at the prospective lateral embryo margin. In late epiboly, drl:EGFP is detectable as a band of scattered EGFP-fluorescent cells; after gastrulation, drl:EGFP-positive cells coalesce at the embryo margin that then in somitogenesis break down into the anterior and posterior lateral plate with subsequent cell migrations that form the posterior vascular/hematopoietic stripes and the anterior cardiovascular and myeloid precursors.
Data is as published in Mosimann & Panakova et al (Nature Communications, 2015)
 
Overall design The same pool of homozygous drl:EGFP transgenic zebrafish were mass-mated 3 times and embryos collected at 2ss. Embryos were de-chorionated, homogenized, and sorted, then subject to mRNA isolation and expression analysis.
 
Contributor(s) Zon L, Mosimann C
Citation(s) 26306682
Submission date Jul 14, 2015
Last update date Oct 13, 2015
Contact name Gabriel Musso
E-mail(s) gabe.musso@gmail.com
Organization name Harvard Medical School
Department Medicine
Lab MacRae
Street address 75 Francis St, Thorn 1123
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL16933 [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version]
Samples (6)
GSM1821235 EGFP-negative 1
GSM1821236 EGFP-negative 2
GSM1821237 EGFP-negative 3
Relations
BioProject PRJNA289756

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70881_RAW.tar 30.1 Mb (http)(custom) TAR (of CEL)
GSE70881_differential_expression_final_results.xlsx 10.4 Mb (ftp)(http) XLSX
Processed data included within Sample table

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