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Series GSE71190 Query DataSets for GSE71190
Status Public on Jul 22, 2015
Title High-density deletion bin map of wheat D genome
Platform organism Triticum aestivum
Sample organism Aegilops tauschii
Experiment type Genome variation profiling by genome tiling array
Summary A NimbleGen array containing both gene-based and RJM repeat junction probe sequences derived from Ae. Tauschii was developed and used to map the Chinese Spring nullisomic-tetrasomic lines and deletion bin lines of the D genome chromosomes.
 
Overall design The NimbleGen array was hybridized in duplicate with Cy3 labeled seven nullisomic-tetrasomic lines, deletion bin lines for D genome chromosomes, and control reference Chinese Spring; as well as Cy5 labeled reference line Chinese Spring.
 
Contributor(s) Wang Y, Gu YQ
Citation(s) 26315263
Submission date Jul 21, 2015
Last update date Oct 21, 2015
Contact name Yi Wang
E-mail(s) bioinfogenome@gmail.com
Organization name USDA, ARS, WRRC
Street address 800 Buchanan Street
City Albany
ZIP/Postal code 94710
Country USA
 
Platforms (1)
GPL20725 NimbleGen CGH 12x135K Microarray
Samples (96)
GSM1829509 Chinese Spring control replicate 1
GSM1829510 Chinese Spring control replicate 2
GSM1829511 nullisomic-tetrasomic line 1D replicate 1
Relations
BioProject PRJNA290521

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71190_RAW.tar 462.5 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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