|
| Status |
Public on Dec 03, 2015 |
| Title |
Identification of Arabidopsis thaliana PRR9 regulated clock components and circadian outputs through genome-wide binding sites analysis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
We identified genome-wide PRR9 targets by conducting chromatin immunoprecipitation followed by high-throughput sequencing.
|
| |
|
| Overall design |
Plants were grown in cycling 12 h light/12 h dark for two weeks before harvesting at ZT4. The four samples include the immunoprecipitated and input control for prr9-1 PRR9::HA-PRR9 CCR2::LUC #109 (HA9) and the prr9-1 (s9c) parental control.
PRR5 PRR7 and TOC1 raw data available from the following Series:
PRR5: GSE36361
TOC1: GSE35952
PRR7: GSE49282 (GSM1196649 and GSM1196650)
|
| |
|
| Contributor(s) |
Liu T, Newton L, Farre EM |
| Citation(s) |
26586835 |
| |
| Submission date |
Jul 27, 2015 |
| Last update date |
Sep 04, 2019 |
| Contact name |
Tiffany L Liu |
| E-mail(s) |
liutiff1@msu.edu
|
| Organization name |
Michigan State University
|
| Department |
Plant Biology
|
| Lab |
Farre
|
| Street address |
3260 Molecular Plant Sciences Building
|
| City |
East Lansing |
| State/province |
Michigan |
| ZIP/Postal code |
48824 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
|
| Samples (4)
|
| GSM1833650 |
prr9-1 PRR9::HA-PRR9 CCR2::LUC #109 Input |
| GSM1833651 |
prr9-1 PRR9::HA-PRR9 CCR2::LUC #109 Immunoprecipitated |
| GSM1833652 |
prr9-1 CCR2::LUC Input |
|
| Relations |
| Reanalysis of |
GSM889585 |
| Reanalysis of |
GSM889586 |
| Reanalysis of |
GSM878068 |
| Reanalysis of |
GSM878069 |
| Reanalysis of |
GSM1196649 |
| Reanalysis of |
GSM1196650 |
| BioProject |
PRJNA291090 |
| SRA |
SRP061647 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE71397_PRR5broad_peaks.bed.gz |
129.4 Kb |
(ftp)(http) |
BED |
| GSE71397_PRR5broad_summits.bed.gz |
117.9 Kb |
(ftp)(http) |
BED |
| GSE71397_PRR7broad_peaks.bed.gz |
18.9 Kb |
(ftp)(http) |
BED |
| GSE71397_PRR7broad_summits.bed.gz |
17.3 Kb |
(ftp)(http) |
BED |
| GSE71397_PRR9broad_peaks.bed.gz |
4.2 Kb |
(ftp)(http) |
BED |
| GSE71397_PRR9broad_summits.bed.gz |
3.9 Kb |
(ftp)(http) |
BED |
| GSE71397_TOC1broad_peaks.bed.gz |
6.8 Kb |
(ftp)(http) |
BED |
| GSE71397_TOC1broad_summits.bed.gz |
6.3 Kb |
(ftp)(http) |
BED |
| GSE71397_annotatedPRR5.txt.gz |
327.4 Kb |
(ftp)(http) |
TXT |
| GSE71397_annotatedPRR7.txt.gz |
51.0 Kb |
(ftp)(http) |
TXT |
| GSE71397_annotatedPRR9.txt.gz |
6.5 Kb |
(ftp)(http) |
TXT |
| GSE71397_annotatedTOC1.txt.gz |
17.2 Kb |
(ftp)(http) |
TXT |
| GSE71397_processed_data_readme.xls |
15.5 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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