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Series GSE71397 Query DataSets for GSE71397
Status Public on Dec 03, 2015
Title Identification of Arabidopsis thaliana PRR9 regulated clock components and circadian outputs through genome-wide binding sites analysis
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis
Summary We identified genome-wide PRR9 targets by conducting chromatin immunoprecipitation followed by high-throughput sequencing.
Overall design Plants were grown in cycling 12 h light/12 h dark for two weeks before harvesting at ZT4. The four samples include the immunoprecipitated and input control for prr9-1 PRR9::HA-PRR9 CCR2::LUC #109 (HA9) and the prr9-1 (s9c) parental control.

PRR5 PRR7 and TOC1 raw data available from the following Series:
PRR5: GSE36361
TOC1: GSE35952
PRR7: GSE49282 (GSM1196649 and GSM1196650)
Contributor(s) Liu T, Newton L, Farre EM
Citation(s) 26586835
Submission date Jul 27, 2015
Last update date Sep 04, 2019
Contact name Tiffany L Liu
Organization name Michigan State University
Department Plant Biology
Lab Farre
Street address 3260 Molecular Plant Sciences Building
City East Lansing
State/province Michigan
ZIP/Postal code 48824
Country USA
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (4)
GSM1833650 prr9-1 PRR9::HA-PRR9 CCR2::LUC #109 Input
GSM1833651 prr9-1 PRR9::HA-PRR9 CCR2::LUC #109 Immunoprecipitated
GSM1833652 prr9-1 CCR2::LUC Input
Reanalysis of GSM889585
Reanalysis of GSM889586
Reanalysis of GSM878068
Reanalysis of GSM878069
Reanalysis of GSM1196649
Reanalysis of GSM1196650
BioProject PRJNA291090
SRA SRP061647

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71397_PRR5broad_peaks.bed.gz 129.4 Kb (ftp)(http) BED
GSE71397_PRR5broad_summits.bed.gz 117.9 Kb (ftp)(http) BED
GSE71397_PRR7broad_peaks.bed.gz 18.9 Kb (ftp)(http) BED
GSE71397_PRR7broad_summits.bed.gz 17.3 Kb (ftp)(http) BED
GSE71397_PRR9broad_peaks.bed.gz 4.2 Kb (ftp)(http) BED
GSE71397_PRR9broad_summits.bed.gz 3.9 Kb (ftp)(http) BED
GSE71397_TOC1broad_peaks.bed.gz 6.8 Kb (ftp)(http) BED
GSE71397_TOC1broad_summits.bed.gz 6.3 Kb (ftp)(http) BED
GSE71397_annotatedPRR5.txt.gz 327.4 Kb (ftp)(http) TXT
GSE71397_annotatedPRR7.txt.gz 51.0 Kb (ftp)(http) TXT
GSE71397_annotatedPRR9.txt.gz 6.5 Kb (ftp)(http) TXT
GSE71397_annotatedTOC1.txt.gz 17.2 Kb (ftp)(http) TXT
GSE71397_processed_data_readme.xls 15.5 Kb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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