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GEO help: Mouse over screen elements for information. |
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Status |
Public on Jun 12, 2017 |
Title |
Globally construct ceRNA regulation network based on comparison with SHEE and SHEEC cell lines |
Organism |
Homo sapiens |
Experiment type |
Non-coding RNA profiling by array
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Summary |
Long non-coding RNAs (lncRNAs), new star ncRNA class of mRNA-like transcripts, play complicate and critical roles in regulating various key biological processes including chromatin modification, transcription and post-transcriptional processing. Remarkably, some lncRNAs serve as a miRNA “sponge” to inhibit mediation of the differentiation of miRNA target in post-transcriptional regulation. Here, we firstly constructed the putative ceRNA network by integrating lncRNAs, miRNAs and mRNAs expression in compared with SHEE and SHEEC cell lines based on the high-though RNA sequencing data and microarray data. Though the biology function analysis, the result showed that ceRNA network mainly participate in PI3K-Akt pathway and may play a modulating role in regulation of essential signal molecules including SYK, FGF11, IL7R, MET, LAMB3, PRS6KB1, ITGB6, ITGB4, ITGA2, ITGA6, EPHA2, SOS2, VEGFA, GRB2, KRAS, CCDN1 and TP53 in primary ESCC. These results could provide us more essential clues for the development of novel therapeutic strategies and efficient drugs target in primary ESCC.
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Overall design |
The SHEEC and SHEE cell lines were pooled with 5 cell lines respectively.
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Contributor(s) |
Sun J |
Citation(s) |
28536623 |
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Submission date |
Aug 18, 2015 |
Last update date |
Jun 14, 2017 |
Contact name |
Jiachun Sun |
Organization name |
Department of Oncology, Cancer Institute, First Affiliated Hospital of Henan University of Science and Technology
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Street address |
24 Jinghua road, Jianxi district
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City |
Luoyang |
State/province |
Henan |
ZIP/Postal code |
471003 |
Country |
China |
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Platforms (1) |
GPL20814 |
Human miRNA Array miRbase release 19 |
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Samples (2) |
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Relations |
BioProject |
PRJNA293166 |
Supplementary file |
Size |
Download |
File type/resource |
GSE72138_RAW.tar |
1.3 Mb |
(http)(custom) |
TAR (of TXT) |
Processed data included within Sample table |
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