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| Status |
Public on Dec 31, 2016 |
| Title |
Small RNAs in rice cultivar Kasalath (Oryza sativa L.) induced by high temperatures during germination |
| Organism |
Oryza sativa |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
The impact of global warming on weather patterns raises concerns for agriculture management. Using NGS technologies, we identified the miRNA profile that is expressed in rice cultivar grown at two different temperatures. We observed 118 and 100 miRNAs uniquely expressed at 35°C and 25°C respectively. Potential targets of these miRNAs have been identified. An interesting example, would be mir1863b which targets Os07g46670.3; a homologue of the ERD15 gene in Arabidopsis which is involved in dehydration stress response.
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| Overall design |
miRNA profiles were generated using the Illumina Miseq sequencer for rice cultivar biological triplicate samples grown under temperature conditions of 35°C and 25°C respectively.
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| Contributor(s) |
Gan HY, Ragu ME, Rahman S |
| Citation missing |
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| Submission date |
Aug 18, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Huan You Gan |
| Organization name |
Monash University Malaysia
|
| Street address |
Jalan Lagoon Selatan
|
| City |
Bandar Sunway |
| State/province |
Selangor |
| ZIP/Postal code |
47500 |
| Country |
Malaysia |
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| Platforms (1) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA293218 |
| SRA |
SRP062559 |
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