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Series GSE72508 Query DataSets for GSE72508
Status Public on May 24, 2016
Title Maize (Zea mays): control vs cold stress
Organism Zea mays
Experiment type Expression profiling by array
Summary Transcriptional profiling of 4 maize varieties comparing genetic root response under control temperature conditions with genetic root response under low temperature conditions
 
Overall design Two-condition experiment, control vs cold stress treatment. Biological replicates: 3 control and 3 treatment per variety, independently grown and harvested. One replicate per array. Hybridization followed a two-channel loop design (direct comparison) where all the samples of interest are hybridised to each other without a reference sample.
 
Contributor(s) Di Fenza M, Hogg B, Gallgher TF, Barth S
Citation(s) 28168096
Submission date Aug 28, 2015
Last update date Mar 17, 2019
Contact name Mauro Di Fenza
E-mail(s) mauro.difenza@gmail.com
Organization name University College Dublin
Street address Belfield
City Dublin
ZIP/Postal code 4
Country Ireland
 
Platforms (1)
GPL6438 Maize oligonucleotide array 46K version
Samples (24)
GSM1863609 control cultivar 1 vs treatment cultivar 1 replicate 1
GSM1863610 treatment cultivar 1 vs control cultivar 2 replicate 1
GSM1863611 control cultivar 2 vs treatment cultivar 2 replicate 1
Relations
BioProject PRJNA294184

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72508_MICROARRAY_ANALYSIS.pdf 15.3 Mb (ftp)(http) PDF
GSE72508_RAW.tar 161.8 Mb (http)(custom) TAR (of GPR)
GSE72508_normalized_data.txt.gz 19.9 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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