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Status |
Public on Aug 23, 2018 |
Title |
Specific control of Arabidopsis BAK1- and SERK4-regulated cell death by protein glycosylation |
Organism |
Arabidopsis thaliana |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Among 24,572 detectable transcripts , we identified 3637 genes showed significant differential expression genes (cut-off: fold changeā„2, FDR<0.1), with 1920 genes showing induced and 1717 reduced expression in the bak1-4/serk4-1 double mutant compared to WT plant.
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Overall design |
RNA-seq analysis was performed with 10-day-old seedlings of WT and bak1-4/ser4-1. Two independent repeats were performed for RNA-seq analysis. For each repeat, equal amount of RNA from two biological replicates was pooled together for RNA-seq library construction. RNA-seq library preparation and sequencing were carried out on an Illumina HiSeq 2500 platform with single end reads.
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Contributor(s) |
de Oliveira MV, Xu G, Li B, Meng X, Chen X, Intorne AC, Babinat AL, de Souza Filho GA, Shan L, He P |
Citation(s) |
27250875 |
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Submission date |
Aug 31, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Libo Shan |
Organization name |
Texas A&M University
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Department |
Department of Plant Pathology and Microbiology
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Lab |
Institute for Plant Genomics and Biotechnology
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Street address |
Norman Borlaug Center 136, TAMU2123
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City |
College Station |
State/province |
Texas |
ZIP/Postal code |
77845 |
Country |
USA |
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Platforms (1) |
GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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Samples (4)
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Relations |
BioProject |
PRJNA294262 |
SRA |
SRP062992 |