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Series GSE72522 Query DataSets for GSE72522
Status Public on Aug 23, 2018
Title Specific control of Arabidopsis BAK1- and SERK4-regulated cell death by protein glycosylation
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Among 24,572 detectable transcripts , we identified 3637 genes showed significant differential expression genes (cut-off: fold changeā‰„2, FDR<0.1), with 1920 genes showing induced and 1717 reduced expression in the bak1-4/serk4-1 double mutant compared to WT plant.
 
Overall design RNA-seq analysis was performed with 10-day-old seedlings of WT and bak1-4/ser4-1. Two independent repeats were performed for RNA-seq analysis. For each repeat, equal amount of RNA from two biological replicates was pooled together for RNA-seq library construction. RNA-seq library preparation and sequencing were carried out on an Illumina HiSeq 2500 platform with single end reads.
 
Contributor(s) de Oliveira MV, Xu G, Li B, Meng X, Chen X, Intorne AC, Babinat AL, de Souza Filho GA, Shan L, He P
Citation(s) 27250875
Submission date Aug 31, 2015
Last update date May 15, 2019
Contact name Libo Shan
Organization name Texas A&M University
Department Department of Plant Pathology and Microbiology
Lab Institute for Plant Genomics and Biotechnology
Street address Norman Borlaug Center 136, TAMU2123
City College Station
State/province Texas
ZIP/Postal code 77845
Country USA
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (4)
GSM1864018 WT_R1
GSM1864019 WT_R2
GSM1864020 bak1-4/serk4-1_R1
Relations
BioProject PRJNA294262
SRA SRP062992

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72522_RAW.tar 700.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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