|
| Status |
Public on Mar 12, 2016 |
| Title |
Sequence-Targeted Nucleosome Sliding in vivo - Transcription Profiling |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA sequencing was performed on various W303 variants to determine effects of nucleosome repositioning on transcript abundance
|
| |
|
| Overall design |
RNA sequencing was carried out in multiple backgrounds to determine effects of nucleosome repositioning in various contexts. For engineered chromatin remodeling factors, a catalytically inactive control was included.
|
| |
|
| Contributor(s) |
McKnight JN, Tsukiyama T, Bowman GD |
| Citation(s) |
26993344 |
| Submission date |
Sep 01, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Jeffrey N McKnight |
| E-mail(s) |
jmcknig2@uoregon.edu
|
| Organization name |
University of Oregon
|
| Department |
Institute of Molecular Biology
|
| Lab |
McKnight Lab
|
| Street address |
1229 University of Oregon, 1318 Franklin Blvd, Rm 273 Onyx Bridge
|
| City |
Eugene |
| State/province |
OR |
| ZIP/Postal code |
97408 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9134 |
Illumina Genome Analyzer (Saccharomyces cerevisiae) |
|
| Samples (17)
|
|
| This SubSeries is part of SuperSeries: |
| GSE72572 |
Sequence-Targeted Nucleosome Sliding in vivo |
|
| Relations |
| BioProject |
PRJNA294375 |
| SRA |
SRP063047 |
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