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| Status |
Public on Jul 01, 2016 |
| Title |
Genome-wide DNA methylation study of hip and knee osteoarthritic and healthy cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
Cartilage samples were collected from hip or knee joint replacement patients either due to primary OA or hip fractures as controls. DNA was extracted from the collected cartilage and assayed by Illumina Infinium HumanMethylation450 BeadChip array, which allows for the analysis of >480,000 CpG sites.
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| |
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| Overall design |
Bisulphite converted DNA from 5 hip osteoarthritic, 6 knee osteoarthritic and 7 hip healhty cartilage samples were hybridised to the Illumina Infinium HumanMethylation450 BeadChip array
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| |
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| Contributor(s) |
Aref-Eshghi E, Zhang Y, Liu M, Harper PE, Martin G, Furey A, Green R, Sun G, Rahman P, Zhai G |
| Citation(s) |
26453558 |
| |
| Submission date |
Sep 30, 2015 |
| Last update date |
Mar 22, 2019 |
| Contact name |
Guangju Zhai |
| E-mail(s) |
guangju.zhai@med.mun.ca
|
| Phone |
1 709 864 6683
|
| Organization name |
Memorial University of Newfoundland
|
| Department |
Genetics, Medicine
|
| Street address |
300 Prince Philip Drive
|
| City |
St. John's |
| State/province |
NL |
| ZIP/Postal code |
A1B 3V6 |
| Country |
Canada |
| |
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| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA297447 |
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