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Status |
Public on Dec 05, 2016 |
Title |
Microarray analysis reveals the molecular foundation of the brown planthopper(BPH) resistance of rice variety Rathu Heenati |
Organism |
Oryza sativa |
Experiment type |
Expression profiling by array
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Summary |
In order to reveal the molecular foundation of BPH resistance of RH, the whole genome expressional profiles of RH together with the control TN1 under BPH infestation were determined using cDNA microarray analysis.
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Overall design |
The experiment design included two rice varieties (RH and TN1), three treatments (natural growth, needle puncturing and BPH infestation) and two sampling time-points (6 and 24 h after BPH infestation). There were 12 samples in total, with three biological replicates per sample.The abbreviations of R6C, R24C, R6N, R24N, R6P, R24P, T6C, T24C, T6N, T24N, T6P and T24P were used to represent these 12 samples. The first letter R or T indicates the rice varieties RH or TN1, respectively; the Arabic numbers in the middle of the abbreviation 6 or 12 indicate the collection time-points 6 or 24 h after the treatment, respectively. The last letter C, N or P indicates the three different treatments: control, needle puncturing or BPH infestation, respectively.
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Contributor(s) |
Li C, Lin Y, Chen H |
Citation(s) |
28245796 |
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Submission date |
Oct 16, 2015 |
Last update date |
Sep 11, 2019 |
Contact name |
Li Changyan |
E-mail(s) |
181804565@qq.com
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Phone |
8602787280516
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Organization name |
Huazhong Agricultural University
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Street address |
Shizishan Road NO.1
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City |
Wuhan |
ZIP/Postal code |
430070 |
Country |
China |
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Platforms (1) |
GPL2025 |
[Rice] Affymetrix Rice Genome Array |
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Samples (36)
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GSM1910516 |
RH widetype 6 h, biological rep1 |
GSM1910517 |
RH widetype 6 h, biological rep2 |
GSM1910518 |
RH widetype 6 h, biological rep3 |
GSM1910519 |
TN1 needle puncturing 6 h, biological rep1 |
GSM1910520 |
TN1 needle puncturing 6 h, biological rep2 |
GSM1910521 |
TN1 needle puncturing 6 h, biological rep3 |
GSM1910522 |
RH needle puncturing 6 h, biological rep1 |
GSM1910523 |
RH needle puncturing 6 h, biological rep2 |
GSM1910524 |
RH needle puncturing 6 h, biological rep3 |
GSM1910525 |
TN1 BPH infestation 6 h, biological rep1 |
GSM1910526 |
TN1 BPH infestation 6 h, biological rep2 |
GSM1910527 |
TN1 BPH infestation 6 h, biological rep3 |
GSM1910528 |
RH BPH infestation 6 h, biological rep1 |
GSM1910529 |
RH BPH infestation 6 h, biological rep2 |
GSM1910530 |
RH BPH infestation 6 h, biological rep3 |
GSM1910531 |
TN1 widetype 24 h, biological rep1 |
GSM1910532 |
TN1 widetype 24 h, biological rep2 |
GSM1910533 |
TN1 widetype 24 h, biological rep3 |
GSM1910534 |
RH widetype 24 h, biological rep1 |
GSM1910535 |
RH widetype 24 h, biological rep2 |
GSM1910536 |
RH widetype 24 h, biological rep3 |
GSM1910537 |
TN1 needle puncturing 24 h, biological rep1 |
GSM1910538 |
TN1 needle puncturing 24 h, biological rep2 |
GSM1910539 |
TN1 needle puncturing 24 h, biological rep3 |
GSM1910540 |
RH needle puncturing 24 h, biological rep1 |
GSM1910541 |
RH needle puncturing 24 h, biological rep2 |
GSM1910542 |
RH needle puncturing 24 h, biological rep3 |
GSM1910543 |
TN1 BPH infestation 24 h, biological rep1 |
GSM1910544 |
TN1 BPH infestation 24 h, biological rep2 |
GSM1910545 |
TN1 BPH infestation 24 h, biological rep3 |
GSM1910546 |
RH BPH infestation 24 h, biological rep1 |
GSM1910547 |
RH BPH infestation 24 h, biological rep2 |
GSM1910548 |
RH BPH infestation 24 h, biological rep3 |
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Relations |
BioProject |
PRJNA299020 |
Supplementary file |
Size |
Download |
File type/resource |
GSE74106_RAW.tar |
167.8 Mb |
(http)(custom) |
TAR (of CEL) |
Processed data included within Sample table |
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