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Series GSE74106 Query DataSets for GSE74106
Status Public on Dec 05, 2016
Title Microarray analysis reveals the molecular foundation of the brown planthopper(BPH) resistance of rice variety Rathu Heenati
Organism Oryza sativa
Experiment type Expression profiling by array
Summary In order to reveal the molecular foundation of BPH resistance of RH, the whole genome expressional profiles of RH together with the control TN1 under BPH infestation were determined using cDNA microarray analysis.
 
Overall design The experiment design included two rice varieties (RH and TN1), three treatments (natural growth, needle puncturing and BPH infestation) and two sampling time-points (6 and 24 h after BPH infestation). There were 12 samples in total, with three biological replicates per sample.The abbreviations of R6C, R24C, R6N, R24N, R6P, R24P, T6C, T24C, T6N, T24N, T6P and T24P were used to represent these 12 samples. The first letter R or T indicates the rice varieties RH or TN1, respectively; the Arabic numbers in the middle of the abbreviation 6 or 12 indicate the collection time-points 6 or 24 h after the treatment, respectively. The last letter C, N or P indicates the three different treatments: control, needle puncturing or BPH infestation, respectively.
 
Contributor(s) Li C, Lin Y, Chen H
Citation(s) 28245796
Submission date Oct 16, 2015
Last update date Sep 11, 2019
Contact name Li Changyan
E-mail(s) 181804565@qq.com
Phone 8602787280516
Organization name Huazhong Agricultural University
Street address Shizishan Road NO.1
City Wuhan
ZIP/Postal code 430070
Country China
 
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (36)
GSM1910513 TN1 widetype 6 h, biological rep1
GSM1910514 TN1 widetype 6 h, biological rep2
GSM1910515 TN1 widetype 6 h, biological rep3
Relations
BioProject PRJNA299020

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Supplementary file Size Download File type/resource
GSE74106_RAW.tar 167.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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