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Series GSE7411 Query DataSets for GSE7411
Status Public on Jun 23, 2007
Title DNaseI sensitivity/hypersensitivity Part II
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary DNaseI sensitivity/hypersensitivity using DNase-array method (Sabo et al Nature Methods 3:511-18, 2006) on Affymetrix whole-genome tiling DNA microarrays. Background: Focal alteration in chromatin structure in vivo, detectable through hypersensitivity to DNaseI and other nucleases, is the sine qua non of diverse transcriptional regulatory elements including enhancers, promoters, insulators, and locus control regions.
Keywords: genomic
 
Overall design Per DNase-array method (Sabo et al Nature Methods 3:511,2006) PMID: 15782197
 
Contributor(s) Stamatoyannopoulos J
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Submission date Mar 30, 2007
Last update date Mar 21, 2017
Contact name John A Stamatoyannopoulos
E-mail(s) jstam@altius.org
Organization name Altius Institute / University of Washington
Department Genome Sciences
Lab Stamatoyannopoulos
Street address 2211 Elliott Avenue, 6th Floor
City SEATTLE
State/province WA
ZIP/Postal code 98121
Country USA
 
Platforms (7)
GPL4910 [Hs35b_P01R] Affymetrix Human Tiling 2.0R Set, Array 1
GPL4911 [Hs35b_P02R] Affymetrix Human Tiling 2.0R Set, Array 2
GPL4912 [Hs35b_P03R] Affymetrix Human Tiling 2.0R Set, Array 3
Samples (201)
GSM178873 C_094_75_02_PDS276_D B
GSM178874 C_094_80_06_PDS276_D D
GSM178875 C_094_065_04_PDS276_D E
This SubSeries is part of SuperSeries:
GSE8222 DNaseI sensitivity/hypersensitivity
Relations
BioProject PRJNA105519

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7411_RAW.tar 8.1 Gb (http)(custom) TAR (of CEL)
Processed data not provided for this record
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