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Series GSE74531 Query DataSets for GSE74531
Status Public on Feb 25, 2024
Title Cooperative role of Lymphotoxin β Receptor and Tumor Necrosis Factor Receptor p55 in murine liver regeneration (PHx Control vs Enbrel)
Organism Mus musculus
Experiment type Expression profiling by array
Summary The liver exhibits a unique capacity for regeneration in response to injury. Lymphotoxin β Receptor (LTβR), a core member of the Tumor Necrosis Factor (TNF)/TNF Receptor (TNFR) superfamily is known to play an important role in this process. However, LTβR functions in the pathophysiological alterations and molecular mechanisms of liver regeneration are so far ill-characterized. Interestingly, LTβR / mice suffered from increased and prolonged liver tissue damage after 70 % hepatectomy (PHx), a finding accompanied by elevated alkaline phosphatase levels and deregulated bile acid (BA) homeostasis. Pronounced differences in the expression patterns of genes relevant for BA synthesis and recirculation were observed. Transcriptome analysis revealed a marked disparity in gene expression programs in LTβR / vs. WT liver tissue, where gene ontology (GO) terms related to transcription, gene expression and metabolic pathways were over-represented in the latter. In addition, murinoglobulin 2 (Mug2), a gene product to date not implicated in liver regeneration, was identified as one of the most differentially regulated genes after PHx in WT compared to LTβR / and TNFRp55-/- livers. LTβR and TNFRp55 share downstream signaling elements. TNFRp55 is known to also play an important role in liver regeneration after PHx. Therefore, LTβR / mice were treated with Etanercept to create mice functionally deficient in both signaling pathways. Strikingly, the combined blockade of TNFR and LTβR signaling leads to complete failure of liver regeneration resulting in death within 24 to 48 hours after PHx. LTβR is essential for efficient liver regeneration and cooperates with TNFRp55 in this process. Differences in survival kinetics strongly suggest distinct functions for these two cytokine receptors in liver regeneration. Failure of TNFR and LTβR signaling renders liver regeneration impossible.
 
Overall design 24 hrs before surgery, LTRβ-/- animals were treated with Etanercept. 12 h after PHx, mice were sacrificed and liver tissue obtained and snap-frozen in liquid nitrogen. Next, RNA was isolated from whole liver tissue after micing of liver tissues and lysis of cells in Trizol (Invitrogen). After purification, RNA was stored at -80°C before further use.
 
Contributor(s) Sorg U, Beyer M, Schultze JL
Citation(s) 26708145
Submission date Oct 30, 2015
Last update date May 27, 2024
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (9)
GSM1922241 PHx-Control (3998897004_B)
GSM1922242 PHx-Enbrel (3998897004_C)
GSM1922243 PHx-Enbrel (3998897004_D)
This SubSeries is part of SuperSeries:
GSE74540 Cooperative role of Lymphotoxin Beta Receptor and Tumor Necrosis Factor Receptor p55 in murine liver regeneration
Relations
BioProject PRJNA300668

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74531_RAW.tar 15.8 Mb (http)(custom) TAR
GSE74531_non-normalized.txt.gz 2.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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