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| Status |
Public on Nov 06, 2015 |
| Title |
ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
In mouse embryonic stem cells SNPs disrupting closely-spaced hexanucleotide motifs are associated with lack of ZFP57 binding and H3K9me3 enrichment.
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| Overall design |
Examination of ZFP57-KAP1 allele-specific binding in two lines of mouse embryonic stem cells JB1 and BJ1 generated from F1 hybrids derived from JF1 x B6 and B6 x JF1 crosses respectively.
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| Web link |
http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=bioinformatico&hgS_otherUserSessionName=Anvar_et_al_2015_NAR
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| |
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| Contributor(s) |
Anvar Z, Cammisa M, Riso V, Baglivo I, Kukreja H, Sparago A, Girardot M, Lad S, De Feis I, Cerrato F, Angelini C, Feil R, Pedone PV, Grimaldi G, Riccio A |
| Citation(s) |
26481358 |
| |
| Submission date |
Nov 06, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Marco Cammisa |
| E-mail(s) |
cammisamarco.py@gmail.com
|
| Organization name |
Institute of Genetics and Biophysics "A. Buzzati Traverso" (IGB-ABT)
|
| Street address |
Via Castellino Pietro, 111
|
| City |
Naples |
| State/province |
Naples |
| ZIP/Postal code |
80131 |
| Country |
Italy |
| |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (6)
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| Relations |
| BioProject |
PRJNA301413 |
| SRA |
SRP065888 |
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