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Series GSE74785 Query DataSets for GSE74785
Status Public on Dec 11, 2015
Title Aedes aegypti Cry11Aa intoxication curve transcriptome
Organism Aedes aegypti
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptomic analysis of mosquito larvae exposed to LC50 of Cry11Aa toxin from Bti at different times was conducted to determine defense response pathways in order to better understand the toxin's mode of action and identify possible cellular targets to enhance toxin activity.
 
Overall design 4 replicates of 5 intoxication time points and 3 replicates of 2 control timepoints were sequenced on an Illumina platform, analyzed for differential expression with two packages. Read data can be accessed through PRJNA301038 and SRP065731
 
Contributor(s) Canton PE, Bravo A, SoberĂ³n M, Gill SS, Cancino-Rodezno A
Citation(s) 26645277
BioProject PRJNA301038
Submission date Nov 06, 2015
Last update date May 15, 2019
Contact name Pablo Emiliano Canton
E-mail(s) pemiliano.canton@gmail.com
Phone 001525554070301
Organization name University of Florida
Department Entomology and Nematology
Lab Bonning
Street address Natural Area Dr.
City Gainesville
State/province Florida
ZIP/Postal code 32611
Country USA
 
Platforms (2)
GPL14869 Illumina Genome Analyzer IIx (Aedes aegypti)
GPL21020 Illumina HiSeq 2000 (Aedes aegypti)
Samples (26)
GSM1933163 Cry11Aa LC50 0Hr replicate 1
GSM1933164 Cry11Aa LC50 3Hr replicate 1
GSM1933165 Cry11Aa LC50 6Hr replicate 1
Relations
SRA SRP065731

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74785_RAW.tar 3.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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