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Series GSE74958 Query DataSets for GSE74958
Status Public on Jun 01, 2016
Title Generation of Patient-Matched Malignant and Normal Primary Cell Cultures from Clear Cell Renal Cell Carcinoma Patients
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptome profiling of de novo-derived ccRCC cell cultures and their matching parental tumours. VHL-mutant and VHL wild-type cultures were established by isolating CA9+ and CA9- cells from tumor samples using FACS.
 
Overall design RNASeq expression profiling of 18 renal cell carcinoma samples, including 6 patient tumours, 6 VHL mutant and 6 VHL WT derivative cell cultures
 
Contributor(s) Brown KR, Ailles L
Citation(s) 27422173
Submission date Nov 12, 2015
Last update date Jul 14, 2022
Contact name Laurie Ailles
E-mail(s) lailles@uhnresearch.ca
Phone 416-581-7868
Organization name University Health Network
Department Princess Margaret Cancer Centre
Lab Ailles Lab
Street address 101 College St.
City Toronto
State/province ON
ZIP/Postal code M5G 1L7`
Country Canada
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (18)
GSM1939007 RCC407 VHLmut
GSM1939008 RCC243 VHLmut
GSM1939009 RCC162 VHLmut
Relations
BioProject PRJNA302010
SRA SRP066118

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74958_RAW.tar 30.6 Mb (http)(custom) TAR (of TXT)
GSE74958_rcc_read_count_mat.txt.gz 726.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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