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Series GSE75593 Query DataSets for GSE75593
Status Public on Feb 01, 2016
Title Common asymptomatic and submicroscopic malaria infections in Western Thailand revealed in longitudinal molecular and serological studies: a challenge to malaria elimination.
Platform organisms Plasmodium falciparum; Plasmodium vivax
Sample organism Homo sapiens
Experiment type Protein profiling by protein array
Summary Malaria is the most important vector-borne disease in Southeast Asia. In Thailand, malaria incidence has been in decline, with the annual parasite incidence dropping to 0.56 in 2007. The Myanmar-Thai border province of Tak is considered meso-endemic for malaria, and both Plasmodium vivax (Pv) and P. falciparum (Pf) are equally present. As part of the International Centers for Excellence in Malaria Research (ICEMR) - Southeast Asia project, malaria surveillance is conducted in Tak on both the healthy population and hospital patients, and parasite prevalence is reportedly <1%. However, little is known about the immuno-epidemiology associated with Pf and Pv infections in the region regarding the breadth and targets of the antibody response to the malaria parasites. Our hypothesis is that the serological profiles of the population will reflect the low parasite prevalence in Tak, showing little antibody reactivity to Pv and Pf. To examine this question, we developed a protein microarray displaying the top 500 most immunogenic antigens of these two Plasmodium species. We collected whole blood samples from healthy residents of Mae Salid Noi village during a Mass Blood Survey for malaria in the region. Whole blood was sent to UCI for qPCR and serology analysis. Blood plasma was probed on the protein microarray; genomic DNA was extracted from RBC pellets and screened by qPCR for infection confirmation and species identification. One-hundred percent (n=381) of serum samples were reactive to both Pv and Pf antigens, including all qPCR-negative samples.
 
Overall design Antibody profiling against P. falciparum and P. vivax proteins was performed on sera from residents of Thailand's Tak province as part of Southeast Asia International Centers for Excellence in Malaria Research (ICEMR). Samples were collected during community-based surveys (n= 298) and hospital outpatient samples (n= 83) in March, August 2013 and January 2014; and 16 unexposed USA controls were probed on a protein microarray displaying 500 P. falciparum and 515 P. vivax proteins.
Web link http://malariajournal.biomedcentral.com/articles/10.1186/s12936-016-1393-4
 
Contributor(s) Baum E, Prachumsri JS, Sirichaisinthop J, Jain A, Molina DM, Liang X, Felgner P, Yan G
Citation(s) 27333893
Submission date Dec 01, 2015
Last update date Jun 27, 2016
Contact name Elisabeth Baum
Organization name University of California Irvine
Street address Med Surge II
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platforms (1)
GPL21194 PfPv500 version4
Samples (397)
GSM1959798 MBS1
GSM1959799 MBS2
GSM1959800 MBS3
Relations
BioProject PRJNA304645

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE75593_raw_data.txt.gz 950.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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