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GEO accession:
Series GSE76420
Query DataSets for GSE76420
Status
Public on Dec 30, 2015
Title
LncRNA DINO guides DNA damage signaling
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by array
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Dec 30, 2015
Last update date
May 15, 2019
Contact name
Adam Schmitt
E-mail(s)
amschmit@stanford.edu
Phone
650-736-0305
Fax
650-723-8762
Organization name
Stanford University
Department
Department of Dermatology
Lab
Howard Y. Chang
Street address
269 Campus Drive
City
Stanford
State/province
CA
ZIP/Postal code
94305-5168
Country
USA
Platforms (4)
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GPL6947
Illumina HumanHT-12 V3.0 expression beadchip
GPL9115
Illumina Genome Analyzer II (Homo sapiens)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (56)
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GSM1038375
HCT116 p53+/+ untreated repeat 1
GSM1038376
HCT116 p53+/+ untreated repeat 2
GSM1038377
HCT116 p53+/+ doxorubicin repeat 1
GSM1038378
HCT116 p53+/+ doxorubicin repeat 2
GSM1038379
HCT116 p53-/- untreated repeat 1
GSM1038380
HCT116 p53-/- untreated repeat 2
GSM1038381
HCT116 p53-/- doxorubicin repeat 1
GSM1038382
HCT116 p53-/- doxorubicin repeat 2
GSM1038383
FL2 CNTRL siRNA untreated repeat 1
GSM1038384
FL2 CNTRL siRNA untreated repeat 2
GSM1038385
FL2 CNTRL siRNA doxorubicin repeat 1
GSM1038386
FL2 CNTRL siRNA doxorubicin repeat 2
GSM1038387
FL2 DINO siRNA untreated repeat 1
GSM1038388
FL2 DINO siRNA untreated repeat 2
GSM1038389
FL2 DINO siRNA untreated repeat 3
GSM1038390
FL2 DINO siRNA doxorubicin repeat 1
GSM1038391
FL2 DINO siRNA doxorubicin repeat 2
GSM1038392
FL2 DINO siRNA doxorubicin repeat 3
GSM2011177
1a_CNRTL_ASO_VEHICLE_REP1
GSM2011178
1b_CNRTL_ASO_VEHICLE_REP2
GSM2011179
2a_CNRTL_ASO_DOXORUBICIN_REP1
GSM2011180
2b_CNRTL_ASO_DOXORUBICIN_REP2
GSM2011181
1a_CNRTL_ASO_VEHICLE_REP3
GSM2011182
1b_CNRTL_ASO_VEHICLE_REP4
GSM2011183
2a_CNRTL_ASO_DOXORUBICIN_REP3
GSM2011184
2b_CNRTL_ASO_DOXORUBICIN_REP4
GSM2011185
3a_DINO_ASO1_VEHICLE_REP1
GSM2011186
3b_DINO_ASO1_VEHICLE_REP2
GSM2011187
4a_DINO_ASO1_DOXORUBICIN_REP1
GSM2011188
4b_DINO_ASO1_DOXORUBICIN_REP2
GSM2011189
5a_DINO_ASO2_VEHICLE_REP1
GSM2011190
5b_DINO_ASO2_VEHICLE_REP2
GSM2011191
6a_DINO_ASO2_DOXORUBICIN_REP1
GSM2011192
6b_DINO_ASO2_DOXORUBICIN_REP2
GSM2011193
9a_CNRTL_ASO_VEHICLE_REP3
GSM2011194
9b_CNRTL_ASO_VEHICLE_REP4
GSM2011195
10a_CNRTL_ASO_DOXORUBICIN_REP3
GSM2011196
10b_CNRTL_ASO_DOXORUBICIN_REP4
GSM2011197
12a_DINO_ASO1_DOXORUBICIN_REP3
GSM2011198
12b_DINO_ASO1_DOXORUBICIN_REP4
GSM2011199
14a_DINO_ASO2_DOXORUBICIN_REP3
GSM2011200
14b_DINO_ASO2_DOXORUBICIN_REP4
GSM2011201
DINO_ChIRP_EVEN
GSM2011202
DINO_ChIRP_ODD
GSM2011203
DINO_ChIRP_RNase_EVEN
GSM2011204
DINO_ChIRP_RNase_ODD
GSM2011205
U2OS_Input
GSM2011206
U2OS_RNase_Input
GSM2011207
WT_UTC.A_3'seq
GSM2011208
WT_UTC.B_3'seq
GSM2011209
WT_DOX.A_3'seq
GSM2011210
WT_DOX.B_3'seq
GSM2011211
LOXP_UTC.A_3'seq
GSM2011212
LOXP_UTC.B_3'seq
GSM2011213
LOXP_DOX.A_3'seq
GSM2011214
LOXP_DOX.B_3'seq
This SuperSeries is composed of the following SubSeries:
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GSE42368
p53-dependent regulation of gene expression following DNA damage
GSE76417
ATAC-Seq on DNA damaged human fibroblasts
GSE76418
lncRNA DINO ChIRPseq in DNA damaged U2OS cells
GSE76419
Dino-dependent gene expression signature in MEFs
Relations
BioProject
PRJNA307252
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE76420_RAW.tar
56.0 Mb
(http)
(custom)
TAR (of BED, NARROWPEAK)
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