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Series GSE76457 Query DataSets for GSE76457
Status Public on Jun 10, 2017
Title hnRNP Q1 targeting RNA in colorectal cancer cell line SW480
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary In order to study the potential targeting RNA of hnRNP Q1 in colorectal cancer, RNA immunoprecipitation were used for collecting hnRNP Q1-associated RNA.
 
Overall design GFP-tag hnRNP Q1 were overexpressed in SW480 cells, then the cytoplasmic lysate was harvested for RNA immunoprecipitation by anti-GFP antibody. Total RNA was extracted from immunoprecipitate and submitted for RNA-seq.
 
Contributor(s) Hung L, Lai C
Citation(s) 28079881
Submission date Dec 31, 2015
Last update date May 15, 2019
Contact name Liang-Yi Hung
E-mail(s) lyhung@mail.ncku.edu.tw
Phone +88662757575-31209
Organization name National Cheng Kung University
Department Institute of Bioinformatics and Biosignal Transduction
Street address No.1, University Rd.
City Tainan
ZIP/Postal code 701
Country Taiwan
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (1)
GSM2024986 hnRNP Q1_RNA-seq
Relations
BioProject PRJNA307345
SRA SRP067974

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76457_RAW.tar 12.6 Mb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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