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Series GSE76486 Query DataSets for GSE76486
Status Public on Oct 14, 2016
Title MBNL1 HITS-CLIP in MDA-MB-231 breast cancer cells
Organism Homo sapiens
Experiment type Other
Summary HITS-CLIP was performed to identify endogenous MBNL1 binding sites on RNAs in MDA-MB-231 breast cancer cells.
 
Overall design A previously published method was used to perform HITS-CLIP for endogenous MBNL1 in MDA-MB-231 breast cancer cells (Moore et al. 2014. Nat Protoc. 9:263-293.)
 
Contributor(s) Fish L, Pencheva N, Goodarzi H, Tran H, Yoshida M, Tavazoie SF
Citation(s) 26883358
Submission date Jan 04, 2016
Last update date May 15, 2019
Contact name Hani Goodarzi
Organization name UCSF
Department Biochemistry and Biophysics
Street address 600 16th St, GH S312D
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2026520 MBNL1_CLIP_rep1
GSM2026521 MBNL1_CLIP_rep2
This SubSeries is part of SuperSeries:
GSE76488 Muscleblind-like 1 suppresses breast cancer metastatic colonization and stabilizes metastasis suppressor transcripts
Relations
BioProject PRJNA307558
SRA SRP068015

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76486_MBNL1_CLIP_binding_sites.bed.gz 76.0 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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