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Series GSE7677 Query DataSets for GSE7677
Status Public on Feb 13, 2017
Title Grape berry developmental series from a vineyard in Willunga, South Australia (WIL-04)
Organism Vitis vinifera
Experiment type Expression profiling by array
Summary Changes in gene expression during berry development during a grape growing season were analysed.
Grape berries were collected and pooled on a weekly basis to obtain a developmental series comprising of 19 developmental stages from flowering until harvest across the grape growing season. Gene expression patterns during development were obtained.
Keywords: Time course, developmental series
 
Overall design Nineteen consecutive developmental stages were analysed for gene expression changes using the Affymetrix one colour array platform. The developmental stages were numbered 1 to 19. Two biological replicates were collected for each developmental stage. Biotin labeled probes were prepared from the extracted RNA from each of the pooled berry samples and hybridised to the Vitis vinifera GeneChip. The sample/GeneChip position on the Affymetrix hybridisation station was randomised using the AlgDesign package from R.
 
Contributor(s) Thomas MR, Davies C, Iocco P
Citation(s) 26084333
Submission date May 01, 2007
Last update date Jun 22, 2017
Contact name Mark Raymond Thomas
E-mail(s) Mark.R.Thomas@csiro.au
Organization name CSIRO
Department Plant Industry
Street address PO Box 350
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
 
Platforms (1)
GPL1320 [Vitis_Vinifera] Affymetrix Vitis vinifera (Grape) Genome Array
Samples (38)
GSM185986 WILsp001_04.t1.rep1
GSM185987 WILsp003_04.t1.rep2
GSM185988 WILsp004_04.t2.rep1
This SubSeries is part of SuperSeries:
GSE7681 Grape berry expression profiling: developmental series and treatment effects
Relations
BioProject PRJNA104033

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7677_RAW.tar 78.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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