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| Status |
Public on Mar 08, 2017 |
| Title |
Transcriptomic analysis of CV. ‘Shine Muscat’ (Vitis vinifera L.) buds during dormant and non dormant period |
| Organism |
Vitis vinifera |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We used Illumina RNA-Seq technology to carry out digital gene expression profiling of Dormant and non dormant buds of Shine Muscat Cultivar.127 pathways were annotated by Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and metabolic, biosynthesis of secondry metabolite and. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis demonstrated that DEGs were involved in various metabolic processes, including phytohormone metabolism. The newly generated transcriptome and gene expression profiling data provide valuable genetic information for revealing transcriptomic variation during dormant and non dormant period in Grapevine and ultimately helpful in uplifting of table grape industry.
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| |
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| Overall design |
Total RNA extracted from 3 samples with three replication for each and compared within all samples
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| |
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| Contributor(s) |
Khalil.Ur.Rehman M, Tao J |
| Citation(s) |
28103799 |
| |
| Submission date |
Jan 22, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Muhammad Khalil Ur Rehman |
| E-mail(s) |
2014204035@njau.edu.cn
|
| Organization name |
Nanjing Agricultural university
|
| Department |
Horticulture
|
| Lab |
Fruit crops Biotechnology
|
| Street address |
WeiGang No.1
|
| City |
nanjing |
| State/province |
Jaingsu |
| ZIP/Postal code |
210095 |
| Country |
China |
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| Platforms (1) |
| GPL18740 |
Illumina HiSeq 2000 (Vitis vinifera) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA309491 |
| SRA |
SRP068759 |
