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Series GSE77765 Query DataSets for GSE77765
Status Public on Feb 11, 2016
Title Detection of a Yersinia pestis homologue in rodent samples
Platform organisms Leptospira interrogans; Campylobacter jejuni; Francisella tularensis subsp. novicida; Yersinia enterocolitica; Yersinia pestis; Yersinia pseudotuberculosis; Rickettsia prowazekii; Rickettsia typhi; Bartonella quintana; Staphylococcus aureus; Mycobacterium avium; Mycobacterium tuberculosis variant bovis; Mycobacterium avium subsp. paratuberculosis; Mycobacterium tuberculosis; Mycobacterium tuberculosis variant microti; Toxoplasma gondii; Cowpox virus; Streptobacillus moniliformis; Bartonella henselae; Mycobacterium canetti; Escherichia coli O157:H7; Salmonella enterica subsp. enterica serovar Typhimurium; Francisella tularensis subsp. tularensis; Francisella tularensis subsp. holarctica; Francisella tularensis subsp. mediasiatica; Paslahepevirus balayani; Mammarenavirus choriomeningitidis; Orthohantavirus puumalaense; Orthohantavirus seoulense
Sample organisms Mus musculus; Rattus norvegicus; Rattus rattus; Apodemus sylvaticus
Experiment type Genome variation profiling by array
Summary A microarray was developed to screen rodent samples for pathogens of zoonotic importance
In the work described here, a homologue to Yersinia pestis was found in rodent samples after screening with the microarray
Overall design A number of rodent samples from the UK and Canada were identified as carrying a homologue to a Yersinia pestis gene
Contributor(s) Giles TA, Abu-Median A, Hannant D, Yon L, Barrow PA, De Bree F, Bossers A
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Submission date Feb 10, 2016
Last update date Jun 14, 2016
Contact name Tim Giles
Organization name University of Nottingham
Street address College Road
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
Platforms (1)
GPL21445 WT_Rodent_Chip_03
Samples (65)
GSM2058778 Pooled_Tissue_Canada [1 - 4A]
GSM2058779 Pooled_Tissue_Canada [1 - 4C]
GSM2058780 Pooled_Tissue_Canada [1 - 4D]
BioProject PRJNA311512

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77765_RAW.tar 810.0 Kb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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