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GEO help: Mouse over screen elements for information. |
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Status |
Public on Apr 13, 2016 |
Title |
Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines II |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by array
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Summary |
To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (pancreatic cancer, esophageal cancer, bladder cancer, prostate cancer, renal cell carcinoma and lung squamous cell carcinoma) were subjected to Agilent whole genome microarrays.
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Overall design |
Human cell lines (Panc-1, sw1990, TE8, TE9, A549, MRC-5, BOY, T24, PC3, C4-2, 786-O, A-498 and EBC-1) were treated with miRNAs (miR-375, miR-29a, miR-26a, miR-145-5p, miR-145-3p, miR-218, miR-320a), siRNAs (si-MMP11, si-LAMP1, si-LOXL2, si-PLOD2, si-UHRF1, and si-FOXM1).
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Contributor(s) |
Seki N, Goto Y |
Citation(s) |
27633630, 27862697, 27072587, 27779648, 27765924, 29050264 |
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Submission date |
Feb 10, 2016 |
Last update date |
Oct 07, 2019 |
Contact name |
Naohiko Seki |
E-mail(s) |
naoseki@faculty.chiba-u.jp
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Phone |
+81-43-226-2971
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Organization name |
Chiba University
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Department |
Functional Genomics
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Street address |
1-8-1, Inohana
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City |
Chiba |
State/province |
Chiba |
ZIP/Postal code |
260-8670 |
Country |
Japan |
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Platforms (1) |
GPL20844 |
Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version] |
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Samples (32)
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GSM2059404 |
Identification of miR-145-5p target genes in EBC-1 |
GSM2059405 |
Identification of miR-145-3p target genes in EBC-1 |
GSM2059406 |
Identification of miR-218 target genes in EBC-1 |
GSM2059407 |
Differentially expressed genes by knocking down of FOXM1-2 in C4-2 |
GSM2059408 |
Differentially expressed genes by knocking down of FOXM1-3 in C4-2 |
GSM2059409 |
Identification of miR-320a target genes in PC3 |
GSM2059410 |
Differentially expressed genes by knocking down of PLOD2-3 in A-498 |
GSM2059411 |
Differentially expressed genes by knocking down of PLOD2-3 in 786-O |
GSM2059412 |
Differentially expressed genes by knocking down of LOXL2-1 in BOY |
GSM2059413 |
Differentially expressed genes by knocking down of LOXL2-3 in BOY |
GSM2059414 |
Differentially expressed genes by knocking down of PLOD2-1 in BOY |
GSM2059415 |
Differentially expressed genes by knocking down of PLOD2-2 in BOY |
GSM2059416 |
Differentially expressed genes by knocking down of UHRF1-1 in BOY |
GSM2059417 |
Differentially expressed genes by knocking down of UHRF1-3 in BOY |
GSM2059418 |
Differentially expressed genes by knocking down of UHRF1-1 in T24 |
GSM2059419 |
Identification of miR-218 target genes in BOY in vivo |
GSM2059420 |
Differentially expressed genes by knocking down of MMP11-2 in BOY |
GSM2059421 |
Differentially expressed genes by knocking down of MMP11-2 in T24 |
GSM2059422 |
Identification of miR-29a target genes in A549 |
GSM2059423 |
Identification of miR-29a target genes in MRC-5 |
GSM2059424 |
Differentially expressed genes by knocking down of UHRF1-2 in 786-O |
GSM2059425 |
Differentially expressed genes by knocking down of UHRF1-3 in 786-O |
GSM2059426 |
Identification of miR-26a target genes in PC3 |
GSM2059427 |
Identification of miR-29a target genes in PC3 |
GSM2059428 |
Identification of miR-375 target genes in Panc-1 |
GSM2059429 |
Identification of miR-375 target genes in sw1990 |
GSM2059430 |
Identification of miR-375 target genes in TE8 |
GSM2059431 |
Identification of miR-375 target genes in TE9 |
GSM2059432 |
Differentially expressed genes by knocking down of LAMP1-2 in PC3 |
GSM2059433 |
Differentially expressed genes by knocking down of LAMP1-3 in PC3 |
GSM2059434 |
Identification of miR-145-5p target genes in PC3 |
GSM2059435 |
Identification of miR-145-3p target genes in PC3 |
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Relations |
BioProject |
PRJNA311555 |
Supplementary file |
Size |
Download |
File type/resource |
GSE77790_RAW.tar |
589.2 Mb |
(http)(custom) |
TAR (of TXT, XLSX) |
Processed data included within Sample table |
Processed data provided as supplementary file |
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