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Series GSE77935 Query DataSets for GSE77935
Status Public on Sep 08, 2016
Title HIPSTR lncRNA knockdown in HEK293 cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary HIPSTR is a conserved lncRNA that is transcribed antisense to TFAP2A gene. Unlike previously reported antisense lncRNAs, HIPSTR expression does not correlate with the expression of its antisense counterpart. HIPSTR depletion in HEK293 and H1BP cells predominantly affects genes involved in early organismal development and cell differentiation.
 
Overall design HEK293 cells were transfected with antisense oligonucleotides (ASOs) targeting HIPSTR (ASO #1 or ASO #2) or control scrambled ASO (ASO CTL); transfection with each ASO was done in triplicate.
 
Contributor(s) Yunusov D, Anderson L, Verjovski-Almeida S
Citation(s) 27605307
Submission date Feb 16, 2016
Last update date Mar 27, 2018
Contact name Sergio Verjovski-Almeida
E-mail(s) sergio.verjovski@butantan.gov.br
Phone 0551126273850
Organization name Instituto Butantan
Street address Av. Vital Brasil 1500
City São Paulo
State/province São Paulo
ZIP/Postal code 05503-900
Country Brazil
 
Platforms (1)
GPL16699 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
Samples (9)
GSM2061660 HEK293 ASO #1 replicate 1
GSM2061661 HEK293 ASO #1 replicate 2
GSM2061662 HEK293 ASO #1 replicate 3
This SubSeries is part of SuperSeries:
GSE77937 HIPSTR lncRNA knockdown in HEK293 and H1BP cells
Relations
BioProject PRJNA312166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77935_expt_1_HIPSTR_lncRNA_knockdown_HEK293_raw_files.tar.gz 35.8 Mb (ftp)(http) TAR
Processed data included within Sample table

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