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Series GSE78609

Query DataSets for GSE78609

Status

Public on Mar 18, 2016

Title

total RNA-seq from vein endothelial cell (ENCSR000CUG)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing

Summary

The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR000CUG/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Feb 25, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL11154

Illumina HiSeq 2000 (Homo sapiens)

Samples (2)

GSM2072464	total RNA-seq from vein endothelial cell (ENCLB555ARL)
GSM2072465	total RNA-seq from vein endothelial cell (ENCLB555ARM)

Relations

Supersedes

GSM984613

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE78609_ENCFF000GMB_contigs_hg19.bigBed	37.5 Mb	(ftp)(http)	BIGBED
GSE78609_ENCFF000GMC_exon_quantifications_hg19.gtf.gz	16.0 Mb	(ftp)(http)	GTF
GSE78609_ENCFF000GME_exon_quantifications_hg19.gtf.gz	19.5 Mb	(ftp)(http)	GTF
GSE78609_ENCFF000GMK_gene_quantifications_hg19.gtf.gz	4.3 Mb	(ftp)(http)	GTF
GSE78609_ENCFF000GMM_gene_quantifications_hg19.gtf.gz	1.8 Mb	(ftp)(http)	GTF
GSE78609_ENCFF000GMO_splice_junctions_hg19.bigBed	11.4 Mb	(ftp)(http)	BIGBED
GSE78609_ENCFF000GMX_transcript_quantifications_hg19.gtf.gz	4.8 Mb	(ftp)(http)	GTF
GSE78609_ENCFF000GMZ_transcript_quantifications_hg19.gtf.gz	4.9 Mb	(ftp)(http)	GTF
GSE78609_ENCFF797OZN_contigs_hg19.bed.gz	29.7 Mb	(ftp)(http)	BED
GSE78609_ENCFF982MDF_splice_junctions_hg19.bed.gz	10.3 Mb	(ftp)(http)	BED
GSE78609_RAW.tar	5.3 Gb	(http)(custom)	TAR (of BIGWIG, TSV, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record