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Series GSE78770 Query DataSets for GSE78770
Status Public on Sep 10, 2016
Title RNA-seq analysis of seasonal and individual variation in blood transcriptomes of healthy captive bottlenose dolphins
Organism Tursiops truncatus
Experiment type Expression profiling by high throughput sequencing
Summary Four captive bottlenose dolpins housed in Kona, Hawaii, were serially sampled at approximately monthly intervals over the course of one year, in order to establish baseline information on the content and variation of the dolphin blood transcriptome.
Overall design Illumina based RNA-seq analyses were carried out on globin-depleted RNA from blood using the Ensembl dolphin genome as a guide. The data set was interrogated for transcripts exhibiting circa-annual rhymthicity, differential expression by season or sex, or correlation to hematological parameters
Contributor(s) Morey JS, Van Dolah FM, Campbell M
Citation(s) 27608714
Submission date Feb 29, 2016
Last update date May 15, 2019
Contact name Jeanine Morey
Organization name National Marine Mammal Foundation
Department Conservation Medicine
Street address 3419 Maybank Hwy, Ste B
City Johns Island
State/province SC
ZIP/Postal code 29455
Country USA
Platforms (1)
GPL21538 Illumina HiSeq 2500 (Tursiops truncatus)
Samples (31)
GSM2076224 Hua_Feb
GSM2076225 Hua_Mar
GSM2076226 Hua_Apr
BioProject PRJNA313464
SRA SRP070960

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78770_DQH_Blood_Trinity.fasta.gz 11.9 Mb (ftp)(http) FASTA
GSE78770_DQH_blood_CuffLinks_Genome.xls.gz 3.0 Mb (ftp)(http) XLS
GSE78770_DQH_blood_RSEM_Genome_data.xls.gz 1.3 Mb (ftp)(http) XLS
GSE78770_DQH_blood_RSEM_Trinity_data.xls.gz 3.4 Mb (ftp)(http) XLS
GSE78770_Data_processing_steps.pdf 271.6 Kb (ftp)(http) PDF
GSE78770_Female_v_Male_FC.xlsx 1.4 Mb (ftp)(http) XLSX
GSE78770_Sum_v_Win_FC.xlsx 1.4 Mb (ftp)(http) XLSX
GSE78770_Sum_v_Win_Female_FC.xlsx 1.4 Mb (ftp)(http) XLSX
GSE78770_Sum_v_Win_Male_FC.xlsx 1.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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