|
| Status |
Public on Sep 10, 2016 |
| Title |
RNA-seq analysis of seasonal and individual variation in blood transcriptomes of healthy captive bottlenose dolphins |
| Organism |
Tursiops truncatus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Four captive bottlenose dolpins housed in Kona, Hawaii, were serially sampled at approximately monthly intervals over the course of one year, in order to establish baseline information on the content and variation of the dolphin blood transcriptome.
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| |
|
| Overall design |
Illumina based RNA-seq analyses were carried out on globin-depleted RNA from blood using the Ensembl dolphin genome as a guide. The data set was interrogated for transcripts exhibiting circa-annual rhymthicity, differential expression by season or sex, or correlation to hematological parameters
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| |
|
| Contributor(s) |
Morey JS, Van Dolah FM, Campbell M |
| Citation(s) |
27608714 |
| |
| Submission date |
Feb 29, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Jeanine Morey |
| Organization name |
National Marine Mammal Foundation
|
| Department |
Conservation Medicine
|
| Street address |
3419 Maybank Hwy, Ste B
|
| City |
Johns Island |
| State/province |
SC |
| ZIP/Postal code |
29455 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21538 |
Illumina HiSeq 2500 (Tursiops truncatus) |
|
| Samples (31)
|
|
| Relations |
| BioProject |
PRJNA313464 |
| SRA |
SRP070960 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE78770_DQH_Blood_Trinity.fasta.gz |
11.9 Mb |
(ftp)(http) |
FASTA |
| GSE78770_DQH_blood_CuffLinks_Genome.xls.gz |
3.0 Mb |
(ftp)(http) |
XLS |
| GSE78770_DQH_blood_RSEM_Genome_data.xls.gz |
1.3 Mb |
(ftp)(http) |
XLS |
| GSE78770_DQH_blood_RSEM_Trinity_data.xls.gz |
3.4 Mb |
(ftp)(http) |
XLS |
| GSE78770_Data_processing_steps.pdf |
271.6 Kb |
(ftp)(http) |
PDF |
| GSE78770_Female_v_Male_FC.xlsx |
1.4 Mb |
(ftp)(http) |
XLSX |
| GSE78770_Sum_v_Win_FC.xlsx |
1.4 Mb |
(ftp)(http) |
XLSX |
| GSE78770_Sum_v_Win_Female_FC.xlsx |
1.4 Mb |
(ftp)(http) |
XLSX |
| GSE78770_Sum_v_Win_Male_FC.xlsx |
1.7 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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