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Series GSE78907 Query DataSets for GSE78907
Status Public on Aug 26, 2016
Title Using single-cell RNA-Seq for unbiased analysis of developmental hierarchies (single cell RNA Seq of Gfi1-/- Irf8-/- GMP)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Single cell RNA seq and bioinformatic analysis is used to characterize myeloid differentiation to uncover novel transcriptional networks and key drivers of hematoipoietic development
 
Overall design Single cell RNA seq of different hematopoietic populations integrated with Chip seq involving multiple markers
 
Contributor(s) Olsson A, Salomonis N, Chaudri V, Aronow B, Singh H, Grimes HL
Citation(s) 27580035
Submission date Mar 04, 2016
Last update date May 15, 2019
Contact name H. Leighton Grimes
E-mail(s) Lee.Grimes@cchmc.org
Phone 513-636-6089
Organization name Cincinnati Childrens Hospital Medical Center
Department Immunobiology
Lab Grimes
Street address 3333 Burnet Ave. MLC 7038
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (47)
GSM2080828 Gfi1-/- Irf8-/- GMP cell A2
GSM2080829 Gfi1-/- Irf8-/- GMP cell A3
GSM2080830 Gfi1-/- Irf8-/- GMP cell A4
This SubSeries is part of SuperSeries:
GSE70245 Using single-cell RNA-Seq for unbiased analysis of developmental hierarchies
Relations
BioProject PRJNA314338
SRA SRP071150

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78907_Gfi1.Null.Irf8.Null.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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