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Series GSE8041 Query DataSets for GSE8041
Status Public on Jun 04, 2008
Title Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa
Platform organisms Coxiella burnetii; Rickettsia rickettsii; Chlamydia muridarum; Chlamydia pneumoniae AR39; Staphylococcus epidermidis RP62A; Staphylococcus epidermidis ATCC 12228; Staphylococcus aureus subsp. aureus MW2; Borreliella burgdorferi B31; Coxiella burnetii RSA 493; Chlamydia caviae GPIC; Chlamydia trachomatis D/UW-3/CX; Staphylococcus haemolyticus JCSC1435; Granulibacter bethesdensis
Sample organism Rickettsia rickettsii
Experiment type Expression profiling by array
Summary Comparison of gene expression between the virulent Rickettsia rickettsii R strain and
avirulent Rickettsia rickettsii Iowa.
Keywords: virulent vs avirulent
 
Overall design Virulent Rickettsia rickettsii R strain in triplicate was compared to avirulent Rickettsia rickettsii Iowa in triplicate
 
Contributor(s) Ellison DW, Clark TR, Sturdevant DE, Virtaneva K, Porcella SF, Hackstadt T
Citation(s) 18025092
Submission date Jun 06, 2007
Last update date Jul 20, 2012
Contact name Dan Sturdevant
E-mail(s) dsturdevant@niaid.nih.gov
Phone 4063639248
Organization name NIH
Department NIAID
Lab RTS
Street address 903 S 4th street
City Hamilton
State/province MT
ZIP/Postal code 59840
Country USA
 
Platforms (1)
GPL4692 [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3
Samples (6)
GSM198443 virulent Rickettsia rickettsii Sheila Smith rep 1
GSM198444 virulent Rickettsia rickettsii Sheila Smith rep 2
GSM198445 virulent Rickettsia rickettsii Sheila Smith rep 3
Relations
BioProject PRJNA100859

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8041_RAW.tar 13.3 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file
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