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Series GSE80423 Query DataSets for GSE80423
Status Public on Dec 11, 2017
Title Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq experiments in Arabidopsis detected MLA1-dependent gene regulation which does not require defence phytohormones signalling.
 
Overall design Three biological replicates were obtained per condition. Arabidopsis plants expressing an MLA1-HA construct in pen2 pad4 sag101 dde2 ein2 sid2 (ppsdes) background were challenged with either Bgh isolate K1 expressing the cognate AVRA1 effector for MLA1 or Bgh isolate A6 expressing other AVRA effectors. Samples were collected at 12, 18, 24 hours post inoculation (hpi) of Bgh.
 
Contributor(s) Maekawa T, Kracher B, Jacob F, Schulze-Lefert P
Citation(s) 29226970
Submission date Apr 19, 2016
Last update date May 15, 2019
Contact name Barbara Kracher
E-mail(s) kracher@mpipz.mpg.de
Organization name Max Planck Institute for Plant Breeding Research
Department Plant-Microbe Interactions
Street address Carl-von-Linné-Weg 10
City Cologne
ZIP/Postal code 50829
Country Germany
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (21)
GSM2127065 MLA1 expressing ppsdes plants unchallenged at 18hpi, replicate 1
GSM2127066 MLA1 expressing ppsdes plants challenged with Bgh K1 isolate at 12hpi, replicate 1
GSM2127067 MLA1 expressing ppsdes plants challenged with Bgh K1 isolate at 18hpi, replicate 1
Relations
BioProject PRJNA318879
SRA SRP073487

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80423_CountTable_At_le_hex_raw.txt.gz 803.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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