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| Status |
Public on Apr 27, 2016 |
| Title |
RNASeq Analysis of the Shoot Apex of Flax (Linum usitatissimum) to Detect Phloem Fiber Specification Genes |
| Organism |
Linum usitatissimum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used RNAseq to compare transcript expression patterns in two segments of the vegetative stem of 14d flax plants, from which all visible leaves had been removed. The segments were: (i) the apical region (AR) of the shoot apex, which contained the apical-most 0.5 mm of the stem, including the SAM and its immediate derivatives; and (ii) the basal region (BR), which contained the entire stem except for the apical-most 1 cm, and therefore represented all stem and vascular tissues at later stages of differentiation as compared to the AR. These data will help identify genes that contribute to specification of phloem fiber identity.
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| Overall design |
Two tissue systems compared using RNASeq, with at least two biological replicates each
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| |
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| Contributor(s) |
Zhang N, Deyholos MK |
| Citation(s) |
27446177 |
| BioProject |
PRJNA229810 |
| |
| Submission date |
Apr 27, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael K Deyholos |
| E-mail(s) |
michael.deyholos@ubc.ca
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| Organization name |
University of British Columbia, Okanagan
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| Street address |
1177 Research Road
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| City |
Kelowna |
| State/province |
British Columbia |
| ZIP/Postal code |
V1V 1V7 |
| Country |
Canada |
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| Platforms (1) |
| GPL21781 |
Illumina HiSeq 2000 (Linum usitatissimum) |
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| Samples (6)
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| Relations |
| SRA |
SRP033325 |
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