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Series GSE80958 Query DataSets for GSE80958
Status Public on May 23, 2016
Title Sonic hedgehog signaling promotes basal radial glia and 1 intermediate progenitor cell
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The unique mental abilities of humans are rooted in the immensely expanded and folded neocortex, which reflects the expansion of neural progenitors, especially basal progenitors including basalradial glia (bRGs, also called outer RGs) and intermediate progenitor cells (IPCs). Here, we show that constitutively active Shh signaling expanded basal progenitors and induced folding in the otherwise smooth mouse neocortex, whereas the loss of Shh signaling decreased the number of basal progenitors and the size of the neocortex. SHH signaling was strongly active in the human fetal neocortex but not in the mouse embryonic neocortex, and blocking SHH signaling in humancerebral organoids decreased the number of bRGs. Mechanistically, Shh signaling increased theinitial generation and self-renewal of bRGs as well as increasing IPC proliferation. Thus, robust SHH signaling in the human fetal neocortex may contribute to basal progenitor expansion and neocortical growth and folding.
 
Overall design 2 normal WT lateral cortical embrynonic E14.5 samples are compared to 3 medial samples in mouse
 
Contributor(s) Wang L, Hou S, Han Y
Citation(s) 27214567
Submission date Apr 29, 2016
Last update date May 15, 2019
Contact name David Finkelstein
E-mail(s) david.finkelstein@stjude.org
Phone 9014953931
Organization name St Jude Children's Research Hospital
Department Computational Biology
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL15103 Illumina HiSeq 1000 (Mus musculus)
Samples (5)
GSM2139014 E14.5 WT medial cortex rep1
GSM2139015 E14.5 WT lateral cortex rep1
GSM2139016 E14.5 WT medial cortex rep2
Relations
BioProject PRJNA320116
SRA SRP074204

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80958_RAW.tar 690.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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