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Series GSE8142 Query DataSets for GSE8142
Status Public on Sep 01, 2007
Title Response of potato and tobacco plants to photoperiod changes
Platform organism Solanum tuberosum
Sample organisms Nicotiana sylvestris; Nicotiana tabacum; Solanum tuberosum subsp. andigenum
Experiment type Expression profiling by array
Summary Plants of Solanum tuberosum ssp andigena, which tuberize only under SD conditions, were grown in growth chambers under non-inductive LD conditions and half of the plants were transferred to inductive SD conditions for 1 or 15 days, whilst the rest of the plants were kept as controls in LD. Transgenic potato plants with reduced phyB levels, which tuberize irrespective of photoperiod, were also grown in LD conditions. All the plants, irrespective of treatment, were harvested 14 hours after the beggining of the photoperiod (i.e. immediately before dusk for plants on LD, and 8 hours after dusk for the plants on SD). A similar experimental protocol was used with plants of N. tabacum cv Hicks that flower at the same time irrespective of photoperiod and the isogenic line N. tabacum cv Hicks carrying the Maryland Mammoth mutant allele, which flower only on SD (i.e. the plants were grown under LD for 55 or 41 days in LD and then transferred for 1 or 15 days to SD conditions, respectively, whilst control plants were grown 56 days in LD). Finally, Nicotiana silvestris plants that flower only on LD were grown in non-inductive SD and then half of the plants were transferred to inductive LD conditions for 1 or 15 days. In all cases we harvested only the leaves, the organ in which daylength perception takes place and photoperiodic responses are initiated. SD conditions in this experiments were 8 hours of light/ 16 hours of darkness, 160 uEinstein, 22 °C. LD conditions were 16 hours of light/ 8 hours of darkness, 80 uEinstein, 22 °C. RNA was extracted with TRIZOL.
Keywords: Direct comparison / Balanced Block Design
 
Overall design 28 hybs total
Web link http://www.tigr.org/tdb/sol
 
Contributor(s) Yanovsky M
Citation(s) 19192291
Submission date Jun 15, 2007
Last update date Mar 25, 2020
Contact name Jia Liu
E-mail(s) jliu@jcvi.org
URL http://www.tigr.org/tdb/potato
Organization name Plant Genomics
Street address 9712 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platforms (1)
GPL1901 Potato 10k cDNA array version 2
Samples (28)
GSM201660 ST_LD41_SD15_vs_ST_LD56_1
GSM201661 ST_LD41_SD15_vs_ST_LD56_2
GSM201662 ST_LD41_SD15_vs_ST_LD56_3
Relations
BioProject PRJNA101029

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8142_RAW.tar 106.8 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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