|
| Status |
Public on Jun 13, 2016 |
| Title |
The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome |
| Organism |
Oryza sativa Japonica Group |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
OsDDM1 and OsDRM2 display functional specificities that define distinct DNA methylation pathways in the bulk of DNA methylation of the rice genome
|
| |
|
| Overall design |
Cr_DJ.CG.bw: Cr_DJ CG methylation
Cr_DJ.CHG.bw: Cr_DJ CHG methylation
Cr_DJ.CHH.bw: Cr_DJ CHH methylation
ddm1ab.CG.bw: ddm1a/1b CG methylation
ddm1ab.CHG.bw: ddm1a/1b CHG methylation
ddm1ab.CHH.bw: ddm1a/1b CHH methylation
S706.CG.bw: osdrm2 CG methylation
S706.CHG.bw: osdrm2 CHG methylation
S706.CHH.bw: osdrm2 CHH methylation
H3k9me2_macs_peaks.xls: CrDJ H3K9me2 modification peaks
H3k9me2_macs_treat_afterfiting.wig: CrDJ H3K9me2 modification wig
CrDJ_K27_macs_peaks.xls: CrDJ H3K27me3 modification peaks
CrDJ_K27_macs_treat_afterfiting.wig: CrDJ H3K27me3 modification wig
DJvsddm1a1b_DESeq2_treated_results.xls: CrDJ and osddm1a1b different expression genes
DJvsS706_DEseq2_treated.results.xls: CrDJ and osdrm2 different expression genes
smRNA24nt.gff: CrDJ 24nt smRNA
smRNA24nt.706.gff: osdrm2 24nt smRNA
|
| |
|
| Contributor(s) |
Tan F, Zhou C, Zhou Q |
| Citation(s) |
27208249 |
| |
| Submission date |
May 13, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
chao zhou |
| E-mail(s) |
zhouchao@ctgu.edu.cn
|
| Organization name |
CTGU
|
| Street address |
No.8,daxuelu Street
|
| City |
yichang |
| ZIP/Postal code |
443002 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL13834 |
Illumina HiSeq 2000 (Oryza sativa Japonica Group) |
|
| Samples (17)
|
|
| Relations |
| BioProject |
PRJNA321532 |
| SRA |
SRP075099 |
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