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Series GSE81436 Query DataSets for GSE81436
Status Public on Jun 13, 2016
Title The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome
Organism Oryza sativa Japonica Group
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary OsDDM1 and OsDRM2 display functional specificities that define distinct DNA methylation pathways in the bulk of DNA methylation of the rice genome
Overall design Cr_DJ CG methylation Cr_DJ CHG methylation Cr_DJ CHH methylation ddm1a/1b CG methylation ddm1a/1b CHG methylation ddm1a/1b CHH methylation osdrm2 CG methylation osdrm2 CHG methylation osdrm2 CHH methylation
H3k9me2_macs_peaks.xls: CrDJ H3K9me2 modification peaks
H3k9me2_macs_treat_afterfiting.wig: CrDJ H3K9me2 modification wig
CrDJ_K27_macs_peaks.xls: CrDJ H3K27me3 modification peaks
CrDJ_K27_macs_treat_afterfiting.wig: CrDJ H3K27me3 modification wig
DJvsddm1a1b_DESeq2_treated_results.xls: CrDJ and osddm1a1b different expression genes
DJvsS706_DEseq2_treated.results.xls: CrDJ and osdrm2 different expression genes
smRNA24nt.gff: CrDJ 24nt smRNA
smRNA24nt.706.gff: osdrm2 24nt smRNA
Contributor(s) Tan F, Zhou C, Zhou Q
Citation(s) 27208249
Submission date May 13, 2016
Last update date May 15, 2019
Contact name chao zhou
Organization name CTGU
Street address No.8,daxuelu Street
City yichang
ZIP/Postal code 443002
Country China
Platforms (1)
GPL13834 Illumina HiSeq 2000 (Oryza sativa Japonica Group)
Samples (17)
GSM2152461 osddm1a/1b Bs-seq
GSM2152462 Cr-DJ Bs-seq
GSM2152463 osddm1a Bs-seq
BioProject PRJNA321532
SRA SRP075099

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SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE81436_CrDJ_K27_macs_peaks.xls.gz 266.3 Kb (ftp)(http) XLS 40.6 Mb (ftp)(http) BW 41.8 Mb (ftp)(http) BW 143.4 Mb (ftp)(http) BW
GSE81436_DJ_K27.bam 1006.5 Mb (ftp)(http) BAM
GSE81436_DJvsddm1a1b_DESeq2_treated_results.csv.gz 1.1 Mb (ftp)(http) CSV
GSE81436_H3k9me2_macs_peaks.xls.gz 203.3 Kb (ftp)(http) XLS
GSE81436_RAW.tar 179.7 Mb (http)(custom) TAR (of WIG)
GSE81436_RJ2.sort.rmdup.bam 1.0 Gb (ftp)(http) BAM 55.6 Mb (ftp)(http) BW 54.4 Mb (ftp)(http) BW 162.8 Mb (ftp)(http) BW 55.1 Mb (ftp)(http) BW 48.7 Mb (ftp)(http) BW 166.5 Mb (ftp)(http) BW
GSE81436_smRNA24nt.706.gff.gz 276.1 Kb (ftp)(http) GFF
GSE81436_smRNA24nt_.gff.gz 155.1 Kb (ftp)(http) GFF
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Raw data are available in SRA
Processed data are available on Series record

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