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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 03, 2016 |
| Title |
Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines (III) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (pancreatic cancer, esophageal cancer, tongue squamous cell carcinoma, hypopharyngeal squamous cell carcinoma and lung squamous cell carcinoma) were subjected to Agilent whole genome microarrays.
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| Overall design |
Human cell lines (Panc-1, SW1990, TE8, TE9, SAS, FaDu and EBC-1) were treated with miRNAs (miR-216b-3p, miR-145-5p, miR-145-3p, miR-150-5p and miR-150-3p), siRNAs (si-ZFP36L2, si-MMP13, si-TPD52, and si-MTDH).
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| Contributor(s) |
Seki N, Goto Y |
| Citation(s) |
27633630, 27862697, 29115582, 27779648, 27765924, 29050264, 28415821 |
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| Submission date |
Jun 01, 2016 |
| Last update date |
Oct 24, 2019 |
| Contact name |
Naohiko Seki |
| E-mail(s) |
naoseki@faculty.chiba-u.jp
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| Phone |
+81-43-226-2971
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| Organization name |
Chiba University
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| Department |
Functional Genomics
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| Street address |
1-8-1, Inohana
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| City |
Chiba |
| State/province |
Chiba |
| ZIP/Postal code |
260-8670 |
| Country |
Japan |
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| Platforms (1) |
| GPL20844 |
Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version] |
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| Samples (16)
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| GSM2183549 |
Identification of miR-145-5p target genes in SAS |
| GSM2183550 |
Identification of miR-145-3p target genes in SAS |
| GSM2183551 |
Identification of miR-150-5p target genes in FaDu |
| GSM2183552 |
Identification of miR-150-3p target genes in FaDu |
| GSM2183553 |
Differentially expressed genes by knocking down of MTDH-1 in EBC-1 |
| GSM2183554 |
Differentially expressed genes by knocking down of MTDH-3 in EBC-1 |
| GSM2183555 |
Identification of miR-150-5p target genes in EBC-1 |
| GSM2183556 |
Identification of miR-150-3p target genes in EBC-1 |
| GSM2183557 |
Identification of miR-216b-3p target genes in PANC-1 |
| GSM2183558 |
Identification of miR-216b-3p target genes in SW1990 |
| GSM2183559 |
Differentially expressed genes by knocking down of ZFP36L2-2 in PANC-1 |
| GSM2183560 |
Differentially expressed genes by knocking down of ZFP36L2-3 in PANC-1 |
| GSM2183561 |
Differentially expressed genes by knocking down of MMP13 in TE-8 |
| GSM2183562 |
Differentially expressed genes by knocking down of MMP13 in TE-9 |
| GSM2183563 |
Differentially expressed genes by knocking down of TPD52-1 in EBC-1 |
| GSM2183564 |
Differentially expressed genes by knocking down of TPD52-2 in EBC-1 |
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| Relations |
| BioProject |
PRJNA324180 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE82108_RAW.tar |
228.1 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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