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Series GSE83087 Query DataSets for GSE83087
Status Public on Dec 13, 2016
Title Whole-Cell Cancer Vaccines Induce Large Antibody Responses to Carbohydrates and Glycoproteins
Platform organisms Quercus alba; Gossypium hirsutum; Trypanosoma cruzi; Pandalus borealis; Oncorhynchus nerka; Gallus gallus; Homo sapiens; Bos taurus; Ovis aries; Oryctolagus cuniculus; Mus musculus; Human immunodeficiency virus 1; Ceratonia siliqua; Megathura crenulata; Bothrops moojeni; Frangula alnus; Senegalia senegal; Pachymenia carnosa; Dermestes lardarius
Sample organism Homo sapiens
Experiment type Other
Summary Purpose: This study uses a high-throughput glycan microarray to profile anti-glycan immune responses to whole-cell vaccines: GVAX Pancreas, K562-GM and H1299. The aim was to indentify anti-glycan antibody responses relevent to patient clinical outcomes
Results: Immune responses to non-human antigens bovine fetuin and alpha-Gal antigens were identified induced by GVAX Pancreas. The magnitude of these responses inversely correlate with patient survival. The non-human antigens were likely incorporated from cell media used for vaccine production. Their presence distracted immune system, resulting in decreased immune response to vaccine antigens.
Conclusion: This study highlighted the importance of anti-glycan immune response in vaccine development. Whole-cell vaccinesderived from human cell lines could incorporate non-human antigens from cell media. These xeno-antigens may have negative impact on the vaccine efficacy.
 
Overall design Anti-glycan antibodies in Pre- and Post-vaccination sera from 62 patients treated with GVAX Pancreas (n=28), K562-GM vaccine (n=26) and H1299 vaccine (n=8) were profiled with glycan microarrays. Responses in anti-glycan IgG and IgM antibodies were quantified by calculating the fold-changes to indivudal antigens before and after vaccination. The magnitude of antibody response was used to evaluate the correlation with patient survival. The results from Kaplan-Meier estimate and Cox regression analysis were further validated with permutations.Finally, mechanistic studies were performed to rationalize the observed inverse correlations between anti-glycan immune responses and patient survival.
 
Contributor(s) Xia L, Schrump DS, Gildersleeve JC
Citation(s) 27889407
Submission date Jun 07, 2016
Last update date Dec 13, 2016
Contact name Jeff Gildersleeve
Organization name National Cancer Institute
Street address 376 Boyles St.
City Frederick
State/province MD
ZIP/Postal code 21702
Country USA
 
Platforms (1)
GPL21991 NCI Glycoarray-411
Samples (168)
GSM2192726 patient 3.004|Pre-vaccination IgG
GSM2192727 patient 3.005|Pre-vaccination IgG
GSM2192728 patient 3.009|Pre-vaccination IgG
Relations
BioProject PRJNA324714

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83087_213A_032514_a411_batch_B_slide_27_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_032514_a411_batch_B_slide_27_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_032514_a411_batch_B_slide_28_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_032514_a411_batch_B_slide_28_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_23_430-390_resize.gpr.gz 1.1 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_23_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_24_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_24_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_25_520-480_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_26_430-390_resize.gpr.gz 1.1 Mb (ftp)(http) GPR
GSE83087_213A_033114_a411_batch_B_slide_26_520-480_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_040114_a411_batch_B_slide_25_430-390_resize.gpr.gz 1.1 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_17_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_17_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_18_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_18_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_19_430-390_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_19_520-480_resize.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_20_430-390_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_042814_a411_batch_B_slide_20_520-480_resize.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_11_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_11_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_12_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_12_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_13_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_13_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_15_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_15_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_16_430-390_resize.gpr.gz 1.2 Mb (ftp)(http) GPR
GSE83087_213A_050114_a411_batch_B_slide_16_520-480_resize.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_20150426_A411_batch_C_Slide_21_430-390.gpr.gz 1.3 Mb (ftp)(http) GPR
GSE83087_213A_20150426_A411_batch_C_Slide_21_520-480.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE83087_README.txt 11.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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