|
| Status |
Public on Dec 31, 2018 |
| Title |
Investigation of Rsf1 genomic distribution and effect on gene expression |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the effect of Rsf1 knockdown or deletion on gene expression in human and mouse cells. We also report the genomic distribution of Rsf1 in mouse embryonic stem cells and nucleosome positioning in wild type and RSF1 knockout mouse ESC.
|
| |
|
| Overall design |
Examination of Rsf1 regulated gene expression, genomic distribution, and chromatin structure in human and mouse cells.
|
| |
|
| Contributor(s) |
Hengbin W |
| Citation(s) |
28855339 |
| |
| Submission date |
Jun 14, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Hengbin Wang |
| Organization name |
Virginia Commonwealth University
|
| Department |
Massey Cancer Institute
|
| Street address |
401 College Street
|
| City |
Richmond |
| State/province |
VA |
| ZIP/Postal code |
23298 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (11)
|
|
| Relations |
| BioProject |
PRJNA325671 |
| SRA |
SRP076563 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE83360_RAW.tar |
2.9 Gb |
(http)(custom) |
TAR (of BEDGRAPH) |
| GSE83360_hg19_CsiRNA_RNF2siRNA_Cuffdiff_on_data_1__data_3__and_data_17_gene_differential_expression_testing.tabular.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSE83360_hg19_CsiRNA_Rsf1siRNA_Cuffdiff_on_data_1__data_2__and_data_17_gene_differential_expression_testing.tabular.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSE83360_hg19_Rsf1siRNA_RNF2siRNA_Cuffdiff_on_data_2__data_3__and_data_17_gene_differential_expression_testing.tabular.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSE83360_mESC_V6.5_gene_differential_expression_testing_.tabular.txt.gz |
835.6 Kb |
(ftp)(http) |
TXT |
| GSE83360_mESC_V6.5_transcript_differential_expression_testing_.tabular.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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