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Series GSE83983 Query DataSets for GSE83983
Status Public on Jul 01, 2017
Title Differential gene expression analysis of pediatric acute myeloid leukemia cell lines treated with azacytidine and panobinostat alone or in combination and compared to vehicle treated cells.
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Pediatric AML cell lines (MV4;11, AML-193 and THP-1) were treated with DNA hypomethylating agent (azacytidine) and a pan histone deactylase inhibitor (panobinostat) alone or in combination. Treatment of AML cell lines with these epigenetic drugs synergistically suppresses cell viability in vitro and in xenograft models in vivo.
Data show differential regulation of gene expression in AML cell lines by epigenetic drugs at concentrations which retained cell viability at a minimum of 75% even in the combination treatment.
 
Overall design MV4;11 cells were treated with vehicle (0.1% DMSO), 0.5 uM azacytidine, 1.5 nM panobinostat or 0.5 uM azacytidine + 1.5 nM panobinostat for 48 h. AML-193 cells were treated with vehicle (0.1% DMSO), 5 uM azacytidine, 5 nM panobinostat or 5 uM azacytidine + 5 nM panobinostat for 48 h. THP-1 cells were treated with vehicle (0.1% DMSO), 3 uM azacytidine, 5 nM panobinostat or 3 uM azacytidine + 5 nM panobinostat for 48 h
 
Contributor(s) Gopalakrishnapillai A, Kolb EA, McCahan SM, Barwe SP
Citation(s) 28505595
NIH grant(s)
Grant ID Grant title Affiliation Name
U54 GM104941 Clinical and Translatlonal Pilot Grants Program UNIVERSITY OF DELAWARE BUCHANAN
P20 GM103446 Delaware INBRE UNIVERSITY OF DELAWARE STEINER
Submission date Jul 04, 2016
Last update date Sep 25, 2019
Contact name Sonali P Barwe
E-mail(s) barwe@medsci.udel.edu
Organization name Alfred I. duPont Hospital for Children
Street address 1701 Rockland Road
City Wilmington
State/province DE
ZIP/Postal code 19803
Country USA
 
Platforms (1)
GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
Samples (60)
GSM2224844 MV4;11-Control-Biological replicate-1
GSM2224845 MV4;11-Control-Biological replicate-2
GSM2224846 MV4;11-Control-Biological replicate-3
Relations
BioProject PRJNA327744

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83983_RAW.tar 521.4 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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