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Series GSE84265 Query DataSets for GSE84265
Status Public on Aug 01, 2016
Title H3K27me3 ChIP-seq in rat peripheral nerve
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of H3K27me3 in rat peripheral nerve was used to identify sites of polycomb repression associated with genes in Schwann cells, which constitute the majority of cells in peripheral nerve.
 
Overall design H3K27me3 ChIP samples were prepared from rat sciatic nerve and then sequenced. Inputs for these ChIP samples have previously been submitted as samples GSM2858934 and GSM2858933.
 
Contributor(s) Ma KH, Svaren J
Citation(s) 27581455
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 NS075269 Epigenetic Regulation of Peripheral Nerve Myelination UNIVERSITY OF WISCONSIN MADISON Svaren
Submission date Jul 11, 2016
Last update date Jan 02, 2022
Contact name John Svaren
E-mail(s) jpsvaren@wisc.edu
Organization name University of Wisconsin
Department Comparative Biosciences
Lab Waisman Center
Street address 1500 Highland Ave.
City Madison
State/province WI
ZIP/Postal code 53705
Country USA
 
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (2)
GSM2230614 Sciatic nerve H3K27me3 ChIP-seq 1
GSM2230615 Sciatic nerve H3K27me3 ChIP-seq 2
Relations
BioProject PRJNA328494
SRA SRP078267

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84265_Combined_H3K27me3_peaks.txt.gz 1.6 Mb (ftp)(http) TXT
GSE84265_Combined_K27Me3.ucsc.bedGraph.gz 240.5 Mb (ftp)(http) BEDGRAPH
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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