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Series GSE85341 Query DataSets for GSE85341
Status Public on Aug 08, 2016
Title Mesenchymal stem cell-derived exosomes stimulate cycling quiescence and early breast cancer dormancy in bone marrow
Organism Homo sapiens
Experiment type Expression profiling by RT-PCR
Summary Transwell cultures were established in 6-well plates with 0.4 micron inserts. Equal amounts (6x10e4) of BCCs and MSCs were added to the outer and inner wells, respectively, in DMEM with 10% exosome-free FCS. After 24 h, the inner wells with BCCs were discarded. The MSCs were washed with PBS and then incubated with DMEM with 2% exosome-free FCS. At 48 h, exosomes were isolated from the MSC media. The exosomes from triplicate wells were added to duplicate naïve BCCs at 2.5x105/well of 6-well plates.
 
Overall design qPCR miRNA expression profiling. RNA from MSCs-Exosomes were analyzed as indicated in the summary. The PCR was run on the 7300 Real-Time PCR System using the following thermal-cycling parameters: 94 0C for 15 min, 40 cycles at 940 C for 10 sec, 550 C for 30s, 700 C for 30 sec followed by a melting curve analysis.
 
Contributor(s) Guiro K, Sandiford OA
Citation(s) 27569215
Submission date Aug 08, 2016
Last update date Nov 28, 2016
Contact name Pranela Rameshwar
E-mail(s) rameshwa@njms.rutgers.edu
Organization name Rutgers NJ Medical School
Department Medicine
Lab Stem Cell and Translational Medicine
Street address 185 South Orange Avenue
City Newark
State/province NJ
ZIP/Postal code 07103
Country USA
 
Platforms (1)
GPL22300 Qiagen Human miFinder miScript miRNA PCR panel (MIHS-001Z)
Samples (3)
GSM2265423 Naïve MSCs
GSM2265424 Primed with MDA-MB-231
GSM2265425 Primed with T47D
Relations
BioProject PRJNA338200

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85341_fold-change.txt.gz 952 b (ftp)(http) TXT
GSE85341_non-normalized_data.txt.gz 968 b (ftp)(http) TXT
Processed data are available on Series record
Processed data included within Sample table

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