|
| Status |
Public on May 30, 2018 |
| Title |
Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We used Illumina-based RNA-seq to identify differentially expressed genes in wild-type Arbaidopsis or in transgenic plants over-expressing HSFA1b-RFP. These data were interescted with ChIP-seq experiments conducted under the same conditions. The aim of the combined analyses was to identify HSFA1b-regulated genes involved in growth to stress transitions.
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| |
|
| Overall design |
RNA-seq in the Arabidopsis genome (wild type and 35S::HSF1b-RFP) under non-stress and heat stress conditions
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| |
|
| Contributor(s) |
Albihlal WS, Mullineaux PM |
| Citation(s) |
29697803 |
| |
| Submission date |
Aug 15, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Philip M Mullineaux |
| E-mail(s) |
mullin@essex.ac.uk
|
| Phone |
+44 (0) 1206 872118
|
| Organization name |
University of Essex
|
| Department |
Environmental and Plant Bioscience Research Group
|
| Lab |
5.36
|
| Street address |
Wivenhoe Park
|
| City |
Colchester |
| State/province |
Essex |
| ZIP/Postal code |
CO4 3SQ |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE85655 |
Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions |
|
| Relations |
| BioProject |
PRJNA339001 |
| SRA |
SRP082177 |
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