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Series GSE860 Query DataSets for GSE860
Status Public on Nov 20, 2004
Title PTSD Normalized data
Organism Homo sapiens
Experiment type Expression profiling by array
Summary PTSD - Posttraumatic stress disorder.
33 samples taken from PMBCs of survivors of psychological trauma, in two time points: in ER, few hours after the truma, and four months later. Some of the patients devepled chronic PTSD (17 samples) and others recovered and set to be the Control group (16 samples). This is the normalized active genes: 4512 probes from U95A chip.
The raw data is available in series GSE845.
Samples are labeled with 3 tags: P/C for PTSD or Control, ER/M4 - for time point of sample, D/ND for Decrement or Non-decrement symptoms over time. (e.g. sample 23C-M4-D-Norm was taken 4 months after trauma from patient 23 which belongs to the control group and showed decrease in symptoms) . Samples include the expression value, the GeneBank accession number and Affymetrix indication of valid calls.
Keywords = PTSD
Keywords = Normalized
Keywords = PMBC
Keywords: other
 
 
Contributor(s) Segman RH, Shefi N, Goltser T, Friedman N, Kaminski N, Shalev A
Citation(s) 15685253
Submission date Dec 09, 2003
Last update date Jul 08, 2016
Contact name Noa Shefi
E-mail(s) shefi@cs.huji.ac.il
Phone 972-3-6964979
Organization name Hebrew University
Department Computer Science
Lab Computational Biology
Street address
City Jerusalem
ZIP/Postal code 91904
Country Israel
 
Platforms (1)
GPL91 [HG_U95A] Affymetrix Human Genome U95A Array
Samples (33)
GSM12955 1P-M4-ND
GSM12956 14C-ER
GSM12957 10P-M4
Relations
BioProject PRJNA87875

ActiveRatios header descriptions
Name Probeset id reference to GPL91
Desc extracted sequence description
1P-M4-ND-Norm Normalized value corresponding to GSM12955
23C-M4-D-Norm Normalized value corresponding to GSM13154
24C-ER-Norm Normalized value corresponding to GSM13155
24C-M4-Norm Normalized value corresponding to GSM13156
3P-ER-ND-Norm Normalized value corresponding to GSM13121
3P-M4-ND-Norm Normalized value corresponding to GSM13122
4P-ER-ND-Norm Normalized value corresponding to GSM13123
4P-M4-ND-Norm Normalized value corresponding to GSM13124
16C-ER-D-Norm Normalized value corresponding to GSM13145
16C-M4-D-Norm Normalized value corresponding to GSM13137
20C-ER-D-Norm Normalized value corresponding to GSM13150
20C-M4-D-Norm Normalized value corresponding to GSM13151
9P-M4-ND-Norm Normalized value corresponding to GSM13130
14C-ER-Norm Normalized value corresponding to GSM12956
10P-M4-Norm Normalized value corresponding to GSM12957
15C-ER-D-Norm Normalized value corresponding to GSM13135
15C-M4-D-Norm Normalized value corresponding to GSM13136
22C-M4-D-Norm Normalized value corresponding to GSM13153
2P-M4-Norm Normalized value corresponding to GSM13120
11P-M4-Norm Normalized value corresponding to GSM13131
5P-ER-Norm Normalized value corresponding to GSM13125
17C-M4-Norm Normalized value corresponding to GSM13146
6P-ER-ND-Norm Normalized value corresponding to GSM13126
6P-M4-ND-Norm Normalized value corresponding to GSM13127
18C-ER-Norm Normalized value corresponding to GSM13147
18C-M4-Norm Normalized value corresponding to GSM13148
12P-ER-Norm Normalized value corresponding to GSM13132
12P-M4-Norm Normalized value corresponding to GSM13133
7P-ER-ND-Norm Normalized value corresponding to GSM13128
8P-ER-ND-Norm Normalized value corresponding to GSM13129
19C-ER-Norm Normalized value corresponding to GSM13149
13P-ER-ND-Norm Normalized value corresponding to GSM13134
21C-M4-ND-Norm Normalized value corresponding to GSM13152

Data table
Name Desc 1P-M4-ND-Norm 23C-M4-D-Norm 24C-ER-Norm 24C-M4-Norm 3P-ER-ND-Norm 3P-M4-ND-Norm 4P-ER-ND-Norm 4P-M4-ND-Norm 16C-ER-D-Norm 16C-M4-D-Norm 20C-ER-D-Norm 20C-M4-D-Norm 9P-M4-ND-Norm 14C-ER-Norm 10P-M4-Norm 15C-ER-D-Norm 15C-M4-D-Norm 22C-M4-D-Norm 2P-M4-Norm 11P-M4-Norm 5P-ER-Norm 17C-M4-Norm 6P-ER-ND-Norm 6P-M4-ND-Norm 18C-ER-Norm 18C-M4-Norm 12P-ER-Norm 12P-M4-Norm 7P-ER-ND-Norm 8P-ER-ND-Norm 19C-ER-Norm 13P-ER-ND-Norm 21C-M4-ND-Norm
EWEIGHT 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
36958_at_X95735 ZYX; X95735; zyxin; Zyxin; has proline-rich sequences and three copies of the LIM domain; focal adhesion; cell-cell signalling 0.467426 -0.767914 0.377268 -0.198702 0.290426 0.0389728 0.547084 0.371584 -0.196141 0.0665861 0.138265 -0.239831 0.368373 0.167617 -0.0295044 0.177163 -0.302048 -0.401082 -0.180918 -0.402626 0.229232 0.321587 0.205722 0.39645 0.0545295 0.199836 -0.563554 -0.0786553 0.28952 0.379881 -0.145738 -0.218768 -0.455527
36217_at_Z35102 NDR; Z35102; serine threonine protein kinase; Serine/threonine kinase; localizes to the nucleus and is activated via autophosphorylation 1.05917 -0.529034 -0.513543 -0.884972 0.921981 1.53937 0.785397 1.00117 -0.947368 0.0822936 -1.2264 0.267593 -0.308707 -0.988139 -0.91983 -1.04143 0.811693 1.35647 0.0632239 -0.983529 1.2754 -0.0476187 -0.386613 -1.08986 0.845457 1.18716 -0.618696 -1.41972 0.201559 0.735642 0.61217 0.509718 0.277695
40982_at_AA926957 FLJ10534; AA926957; hypothetical protein FLJ10534; 0.0774717 0.0578392 -0.14237 0.098499 0.0764347 0.180447 -0.0455921 -0.0849323 0.0882755 -0.0625937 -0.383526 -0.0880428 0.107714 -0.29763 -0.0407059 -0.159557 0.016828 0.187409 0.133086 0.00707092 0.148989 -0.0386772 -0.033939 0.242537 0.114961 0.119284 0.251846 0.0904534 -0.189763 0.0110687 0.0313522 -0.173399 -0.0213819
35978_at_AF009242 PRRG1; AF009242; proline-rich Gla (G-carboxyglutamic acid) polypeptide 1; Proline-rich gamma-carboxyglutamic acid transmembrane protein 1; vitamin K-dependent 0.550041 0.345553 -0.339784 -0.234752 -0.15936 -0.245873 -0.345237 -0.0227207 -0.33559 -0.166725 -0.143945 -0.101729 0.710306 -0.087416 0.0467205 0.0422597 0.205049 0.25167 0.480821 0.120476 0.127132 -0.10244 0.101298 -0.17879 -0.0123275 -0.0641261 -0.019096 0.07587 -0.177552 0.200215 -0.199929 -0.314362 -0.255983
35218_at_AF022385 PDCD10; AF022385; programmed cell death 10; Moderately similar to a region of uncharacterized C. elegans C14A4.11 -0.708809 0.467302 0.069856 0.0365225 0.146462 -0.363475 -0.54783 -0.252993 0.402695 -0.194541 0.0549668 0.397542 -0.487131 0.184354 0.186623 0.449461 -0.00948146 0.156963 -0.142965 0.591635 -0.37181 -0.0635807 -0.296821 0.0980865 0.0904201 -0.263042 0.585935 -0.450766 -0.711928 -0.322431 0.0527498 -0.522248 -0.401973
33234_at_AA887480 BCAA; AA887480; RBP1-like protein; Contains an ARID (AT-Rich Interaction Domain) DNA binding domain -0.599827 0.641886 -0.0358591 0.080017 0.0699126 -0.172631 -0.499624 -0.57068 0.0317668 0.0693441 0.221641 0.757934 -0.800481 0.373346 -0.0882227 0.46076 0.0999737 0.218831 -0.0593142 0.474552 -0.0902275 0.360364 -0.104244 -0.390675 0.11272 -0.0253794 0.637323 0.154812 -0.190608 -0.462497 -0.191777 -0.780196 -0.751872
38034_at_M16505 STS; M16505; steroid sulfatase (microsomal), arylsulfatase C, isozyme S; Microsomal steroid sulfatase; hydrolyzes 3 beta-hydroxysteroid sulfates; endosome; microsome; steryl-sulfatase; steroid catabolism -0.281787 -0.195701 0.191321 -0.0191599 -0.101037 0.277016 -0.151631 -0.24446 0.12497 0.0262504 0.0963333 0.19593 -0.0810142 0.00673114 0.291259 0.025032 0.1314 0.308 -0.509278 0.239689 -0.315906 0.278424 -0.143413 -0.16655 0.00706859 -0.258075 -0.0149436 0.0346164 0.191426 4.29E-05 0.229033 -0.322699 -0.676978
37015_at_K03000 ALDH1A1; K03000; aldehyde dehydrogenase 1 family, member A1; Cytosolic aldehyde dehydrogenase; binds androgen; androgen binding; aldehyde metabolism; aldehyde dehydrogenase (NAD+) -0.473675 -0.372995 0.655816 0.183809 -0.789124 -0.409497 0.0673687 0.567762 0.576878 -0.266634 -0.265529 -0.669334 0.287579 -0.372408 -0.499207 0.300755 0.180024 0.429362 -0.578319 0.0919955 -0.0988921 0.601009 -0.822622 -0.491986 0.286172 0.0100862 0.277487 -0.63224 -0.270032 -0.0523414 0.407298 -0.446376 -0.162918
40169_at_AF057140 TIP47; AF057140; cargo selection protein (mannose 6 phosphate receptor binding protein); Mannose 6 phosphate receptor binding protein; mediates transport of mannose-6-P receptors from endosomes to golgi; endosome; vesicle transport 0.406617 -0.0672795 0.101025 -0.161081 -0.0666556 0.163548 0.560494 0.274897 -0.145757 0.187369 0.134683 -1.32434 0.0175244 0.190239 0.167925 -0.0228445 0.0456685 -0.09883 -0.11844 -0.38065 -0.0725013 0.209572 0.149999 0.0887121 -0.00035685 0.0598186 -0.794293 -0.538085 0.326948 -0.0138365 0.106888 -0.0681481 0.300444
35060_at_U51224 U2AF1RS1; U51224; U2 small nuclear ribonucleoprotein auxiliary factor, small subunit 1; Putative ortholog of murine U2af1-rs1 and U2af1-rs2; may be a small nuclear ribonucleoprotein auxiliary factor; mRNA splicing; small nuclear ribonucleoprotein 0.180354 0.262712 0.371421 0.229416 0.167274 0.342606 -0.131079 -0.0890585 -0.36465 0.0456382 -0.129261 -1.96348 0.219806 -0.0789591 0.326957 0.21762 0.211261 0.167168 -0.321252 0.611598 -0.302893 0.226046 -0.230541 -0.45799 -0.174271 -0.183297 0.369803 -0.319774 0.246667 -0.170645 0.147849 -0.0170426 -0.443771
36742_at_U34249 TRIM15; U34249; tripartite motif-containing 15; 0.532679 -0.181276 0.118917 -0.00438663 -0.054313 0.00390625 0.571672 0.429412 -0.526626 0.1163 -0.273791 -0.622505 0.134451 -0.233116 -0.00752515 0.0828561 0.387415 0.241058 0.072378 -0.345134 0.171799 0.0737443 0.17605 -0.288112 0.168659 -0.0712693 -0.367615 -0.43231 -0.0308284 0.179225 0.0661218 -0.158393 0.523758
39844_at_AI806379 HIP2; AI806379; huntingtin interacting protein 2; Ubiquitin-conjugating enzyme; ubiquitin--protein ligase; ubiquitin conjugating enzyme; ubiquitin-dependent protein degradation; small ubiquitin-related protein 1 conjugation -0.0158336 0.183968 -0.295719 -0.591063 -0.316117 0.20184 0.63872 0.267474 -0.140348 0.0827054 -0.491337 -2.11531 1.2323 -0.329929 -0.486994 -0.00642184 0.380621 0.232539 0.299153 0.223756 0.0885414 0.65306 0.46492 -0.028148 0.0659479 0.265222 -0.00780494 -0.030917 0.033908 0.115448 -0.161922 -1.20292 0.806112
36617_at_X77956 ID1; X77956; inhibitor of DNA binding 1, dominant negative helix-loop-helix protein; Member of the Id helix-loop-helix family of proteins; may negatively regulate cell differentiation -0.615042 -0.292831 0.459921 -0.00792726 -0.089561 0.255221 -0.196873 0.334464 0.106312 -0.259368 0.684113 -0.470411 0.166041 1.74686 0.23985 -0.624244 -0.939641 -0.614705 -0.27449 -0.0883729 -0.616535 -0.317876 0.134624 -0.461956 0.47064 -0.693818 -0.656005 -0.343834 0.833829 1.26895 0.133662 -0.413877 -0.540361
34432_at_AF051325 SH2D2A; AF051325; SH2 domain protein 2A; Contains SH2 domain and SH3- and phosphotyrosine-binding domains -0.0853055 -0.305147 0.368905 0.756087 0.145824 -0.400758 -0.19379 -0.641067 -0.020393 -0.309656 1.10806 0.0194585 -0.693261 -0.190737 -0.148123 0.434024 0.138096 -0.0876422 -0.276283 -0.0806015 0.207882 -0.14423 0.46258 -0.389663 0.338511 0.324382 0.212954 0.63965 -0.209499 -0.0440901 -0.103434 0.206585 -0.184459
35874_at_D87845 PAFAH2; D87845; platelet-activating factor acetylhydrolase 2 (40kD); Platelet-activating factor acetylhydrolase (isoform II); monomeric cytosolic enzyme that inactivates platelet-activating factor; phospholipid binding -0.477199 0.271885 0.0238965 0.200067 0.399171 0.00146214 -0.144751 -0.144979 -0.174496 -0.277328 0.0528256 0.333044 0.40203 0.00116301 0.0482384 0.1813 0.181991 0.118827 0.0740744 -0.00877642 0.209204 0.295468 0.0884333 -0.237616 0.0970881 0.326704 0.0479239 0.1309 -0.212146 0.35982 0.041344 -1.13401 -0.0770367
40046_r_at_AF009426 C18orf1; AF009426; chromosome 18 open reading frame 1; -1.788 0.453448 -0.33646 -0.484206 -0.246955 -0.225071 0.0599609 -0.283183 0.345186 0.147114 -0.587044 0.873231 -0.038425 -1.23486 -0.261723 0.28182 0.477173 0.747511 0.0473933 0.11108 -0.391324 0.460303 -0.0995865 -1.05937 0.383879 0.287922 0.287177 -0.184796 -0.188813 0.0889772 0.164205 -0.424751 -0.644188
31671_at_D82351 RBMS1; D82351; RNA binding motif, single stranded interacting protein 1; Member of the MSSP family; binds to a c-myc replication origin/transcriptional enhancer site; contains RRM (RNA recognition motif) domains; RNA processing; DNA replication; translational regulation; double-stranded DNA binding; single-stranded DNA binding -0.0172667 -0.0520379 0.133978 -0.218274 0.141856 0.218687 0.285963 0.159925 0.226473 0.00177969 -0.167958 -0.0216853 -0.358139 0.554861 0.285562 -0.0254494 -0.0928087 0.220589 -0.280979 0.296824 0.307263 0.387715 -0.515723 -0.274661 0.118939 0.239901 0.641112 -0.148307 0.283117 -0.391638 0.17346 -0.475969 -1.46347
40957_at_D63881 JJAZ1; D63881; joined to JAZF1; -0.346048 0.713637 -0.233904 -0.222805 -0.428816 -0.418132 -0.365087 0.0080136 0.639895 0.153116 0.327006 0.350319 -0.322712 0.582168 0.427665 0.569197 0.240978 0.20395 0.394531 0.675783 -0.467522 0.659781 -0.203539 -1.15947 0.177462 0.128486 1.0544 -0.181743 -0.332129 -0.32945 -0.197884 -0.555374 -1.7883
36483_at_X92689 GALNT3; X92689; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3); UDP-N-acetyl-a-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3; initiates O-glycosylation of serine and threonine residues; carbohydrate metabolism; polypeptide N-acetylgalactosaminyltransferase -0.648206 0.431259 0.104894 -0.0307614 0.458581 -0.102515 -0.360835 -0.164483 0.0126448 -0.400161 0.248955 0.359524 0.410207 0.110466 0.0990128 0.246346 -0.0920157 -0.0696614 -0.165414 0.384927 0.151463 0.328665 -0.00490083 -0.24149 0.207268 0.35825 0.270443 -0.0556522 -0.435381 0.499894 -0.142111 0.245749 -0.333487

Total number of rows: 4513

Table truncated, full table size 2200 Kbytes.




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Supplementary data files not provided
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