NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE86118 Query DataSets for GSE86118
Status Public on Aug 21, 2017
Title Pneumococci in the heart subvert the host response through biofilm-mediated macrophage killing
Organisms Mus musculus; Streptococcus pneumoniae TIGR4
Experiment type Expression profiling by high throughput sequencing
Summary For over 130 years, invasive pneumococcal disease has been associated with the presence of extracellular diplococci or short chains in affected tissues. Herein, we show that Streptococcus pneumoniae that invade the myocardium from the bloodstream replicate within cellular vesicles and transition into non-purulent biofilms. Pneumococci within cardiac microlesions exhibited salient biofilm properties including intrinsic resistance to antibiotic killing and the presence of an extracellular matrix. Dual RNA-seq data generated from heart- and blood-isolated pneumococci confirmed the biofilm phenotype in vivo and revealed stark anatomical site-specific differences in virulence gene expression; the latter having major implications on vaccine antigen selection. Genes within three genomic islands were identified as exclusively expressed in vivo. Deletion of one such island, i.e. Region of Diversity 12, resulted in a biofilm-deficient and highly inflammogenic phenotype, suggesting a link between the ability to form biofilms and a dampened host-response. We subsequently determined that biofilm pneumococci subvert cytokine/chemokine production and myocardial neutrophil infiltration by rapidly killing cardiac macrophages in a pneumolysin dependent manner. Our findings contradict the emerging notion that biofilm pneumococci are immunoquiescent and instead show that biofilm S. pneumoniae actively suppress the host response through pneumolysin-mediated immune cell killing.
 
Overall design 14 mRNA profiles of Streptococcus pneumoniae samples that were grown under different conditions were generated using deep sequencing (3 planktonic, 3 biofilm, 3 infected mouse hearts, 2 infected mouse blood and 3 uninfected mouse hearts).
 
Contributor(s) Shenoy AT, Gilley RP, Kumar N, Hinkle W, Gonzalez-Juarbe N, Wang Y, Brissac T, Daugherty SC, Shetty AC, Ott S, Tallon LJ, Deshane J, Tettelin H, Orihuela CJ
Citation(s) 28841717
Submission date Aug 26, 2016
Last update date Jul 25, 2021
Contact name Suvarna Nadendla
Organization name University of Maryland School of Medicine
Department Institute for Genome Sciences
Street address 670 W.Baltimore Street
City Baltimore
State/province MD
ZIP/Postal code 21201
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL22373 Illumina HiSeq 4000 (Streptococcus pneumoniae TIGR4)
Samples (14)
GSM2293981 IR1
GSM2293982 IR3
GSM2293983 IR4
Relations
BioProject PRJNA340293
SRA SRP083088

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86118_RAW.tar 20.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap