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| Status |
Public on Sep 06, 2019 |
| Title |
RTEL1 modulates H3 occupancy in heterochromatic regions and acts synergistically with MET1/DDM1 to maintain genome integrity |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
RTEL1 mainly mediates histone H3 occupancy in heterochromatic regions and functions in parallel with DDM1 and MET1 to maintain genome integrity.
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| Overall design |
Examine DNA methylation, histone modification and gene expression changes by whole-genome bisulfite sequencing; RNA sequencing; H3K27me3-, H3K4me3-, H3K9me2-, H3-ChIP-sequencing in L119 and rtel1-3 mutant
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| Contributor(s) |
Zhao X, Cheng J, Wang J, Meng J, Jin D, Zhao X, Zhu J, Gong Z |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 06, 2016 |
| Last update date |
Sep 08, 2019 |
| Contact name |
Jinkui Cheng |
| E-mail(s) |
chengjinkui@cau.edu.cn
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| Organization name |
China Agricultural University
|
| Lab |
Zhizhong Gong
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| Street address |
No.2 Yuanmingyuan West Road
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| City |
Beijing |
| ZIP/Postal code |
100193 |
| Country |
China |
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| Platforms (2) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA341942 |
| SRA |
SRP086609 |
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