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| Status |
Public on Sep 02, 2019 |
| Title |
CsIND regulates vascular formation and resistance to biotic and abiotic stresses in cucumber (Cucumis sativus L.) |
| Organism |
Cucumis sativus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The plant vascular system is essential for the enlarged plant stature and successful colonizzation the land by delivering resources throughout the plants and providing mechanical support. Despite several regulators of vascular patterning have been reported, how vascular system mediates stress resistance remain largely unknown. Here we identified a CsIND transcription factor that is specifically expressed in the xylem and phloem tissues in cucumber. Knock down of CsIND by RNAi lead to dwarf plants with enlarged or disorganized vascular systems in all aerial organs. The content of both auxin and jasmonic acid were increased in the CsIND-RNAi lines. Transcriptome profiling by RNA-Seq hints CsIND-regulated gene networks for defense response and vascular development. Biochemical analyses verified that CsIND directly binds to well-known vascular regulators including CsCCR1, CsMYB116, CsYAB5, CsBP and CsAUX, and physically interacts with dorsiventral patterning genes CsKAN2 and CsYAB5. Further, CsIND-RNAi plants displayed significantly enhanced tolerance to nitrogen dificency and resistance to cucumber downy mildew. Therefore, CsIND regulates vascular formation and resistance to biotic and abiotic stresses in cucumber, through the combinarory interactions with well-known vascular regulaors and hormone metabolism and signaling pathways.
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| Overall design |
Leaf veins and fruits four days before anthesis of WT and CsIND-RNAi transgenic cucumber plants were collected for RNA-seq analysis. Two biological replicates were performed for each tissue sample.
Please note that [1] the identifiers in the processed data file are searchable at: http://www.icugi.org/cgi-bin/ICuGI/genome/home.cgi?ver=2&organism=cucumber&cultivar=Chinese-long
[2] the 'M' is changed to 'G', and the isoform information has been deleted. For example, the 'Csa3G002400' corresponds to 'Csa3M002400.1' in the website.
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| Contributor(s) |
Yan S, Ning K, Ding L, Zheng H, Cheng Z, Zi H, Wang Z, Lv Q, Zhao J, Che G, Zhao W, Jiang L, Wang H, Liu X, Chen Z, Shen J, Gu R, Qian W, Liu R, Luo L, Li X, Zhang X |
| Citation(s) |
32203514 |
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| Submission date |
Sep 06, 2016 |
| Last update date |
Apr 13, 2020 |
| Contact name |
Hailing Zi |
| E-mail(s) |
hlzi@sibs.ac.cn
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| Organization name |
Shanghai center for plant stress biology
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| Street address |
Chenhua road3888
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| City |
Shanghai |
| ZIP/Postal code |
201602 |
| Country |
China |
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| Platforms (1) |
| GPL16310 |
Illumina HiSeq 2000 (Cucumis sativus) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA342056 |
| SRA |
SRP087122 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE86496_Table.8cucumber.RPM.txt.gz |
802.6 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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