|
| Status |
Public on Aug 15, 2017 |
| Title |
Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic Escherichia coli E2348/69 |
| Organisms |
Escherichia coli HS; Escherichia coli O127:H6 str. E2348/69 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Global transcriptional analysis of EPEC/ETEC hybrid isolates.
|
| |
|
| Overall design |
RNA sequencing was performed on seven E. coli during growth in laboratory media and conditions that have been previously demonstrated to induce expression of virulence genes.
|
| |
|
| Contributor(s) |
Hazen T, Daugherty S, Shetty A, Rasko D |
| Citation(s) |
28615618 |
| BioProject |
PRJNA237642 |
| |
| Submission date |
Sep 09, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Sean Daugherty |
| E-mail(s) |
sdaugherty@som.umaryland.edu
|
| Phone |
410-706-8012
|
| Organization name |
University of Maryland School of Medicine
|
| Department |
Institute for Genome Sciences
|
| Street address |
801 W. Baltimore St.
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21201 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL20262 |
Illumina HiSeq 2000 (Escherichia coli O127:H6 str. E2348/69) |
| GPL22414 |
Illumina HiSeq 2000 (Escherichia coli HS) |
|
| Samples (9)
|
|
| This SubSeries is part of SuperSeries: |
| GSE86640 |
Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic Escherichia coli |
|
| Relations |
| SRA |
SRP039414 |
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