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Series GSE87064 Query DataSets for GSE87064
Status Public on May 03, 2017
Title The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Summary Check Web Link for HMMs(11 States) for Retina hg19 and mm9

https://pecan.stjude.cloud/proteinpaint/study/retina_hic_2018
 
Overall design Refer to individual Series
Web link https://drive.google.com/drive/folders/0B3idwQEHsXe6Tlc0WXA4S0ZHLW8?resourcekey=0-Hqmj-fTBNG-TUrCWIgF2pg&usp=sharing
 
Citation(s) 28472656, 29514090, 31493975
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 CA168875 Molecular Targeted Therapy for Retinoblastoma ST. JUDE CHILDREN'S RESEARCH HOSPITAL MICHAEL A DYER
R01 EY014867 Cell type-specific roles of Rb in retinal differentiation ST. JUDE CHILDREN'S RESEARCH HOSPITAL MICHAEL A DYER
R01 EY018599 Proliferation and Differentiation of Retinal Stem Cells ST. JUDE CHILDREN'S RESEARCH HOSPITAL MICHAEL A DYER
Submission date Sep 19, 2016
Last update date Jan 19, 2024
Contact name Beisi Xu
E-mail(s) beisi.xu@stjude.org
Organization name St Jude Children's Research Hosipital
Department Center for Applied Bioinformatics
Street address 262 Danny Thomas Pl
City Memphis
State/province Tennessee
ZIP/Postal code 38105
Country USA
 
Platforms (6)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (868)
GSM2316298 BRD4-AB1-FW13
GSM2316299 BRD4-AB1-FW15
GSM2316300 BRD4-AB1-FW20
This SuperSeries is composed of the following SubSeries:
GSE86981 The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [ChIP-Seq_Hs]
GSE87037 The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [ChIP-Seq_Mm]
GSE87042 The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [RNA-Seq_Hs]
Relations
BioProject PRJNA343603

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87064_RAW.tar 137.2 Gb (http)(custom) TAR (of BED, BW, MTX, TSV, TXT)
SRA Run SelectorHelp
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