|
| Status |
Public on Aug 01, 2008 |
| Title |
rfppr-Comparing nuclear gene expression in two CMS-systems using microarray technology |
| Platform organism |
Arabidopsis thaliana |
| Sample organism |
Brassica napus |
| Experiment type |
Expression profiling by array
|
| Summary |
ra05-11_cmsrapeseed - rfppr - -To understand how/if fertility and the mitochondrial background are interlinked. -To understand how the mitochondrial background influences the nuclear gene expression. -Compare and describe the total nuclear gene expression of CMS vs. fertile and CMS vs. Restored. -Describe and analyse genes that differ in expression (of special interest are genes that differs in both comparisons). -Group genes e.g. floral genes, highly expressed genes, transcription factors, nuclear encoded genes targeted for the mitochondrion. -Comparing two CMS-systems to elucidate differences and similarities between them. - Flower buds from three B. napus lines (Pactol, CMS, Rfo PPR) at one developmental stage (stage 8).
Keywords: wt vs mutant comparison
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| |
|
| Overall design |
6 dye-swap - CATMA arrays
|
| Web link |
http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_expce.pl?experiment_id=133
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| |
|
| Contributor(s) |
Bitton F, Renou JP, Budar F, Martin-Magniette ML |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 20, 2007 |
| Last update date |
May 03, 2012 |
| Contact name |
Frederique Bitton |
| E-mail(s) |
bitton@evry.inra.fr
|
| URL |
http://www.evry.inra.fr
|
| Organization name |
INRA
|
| Lab |
URGV
|
| Street address |
2 rue Gaston Cremieux
|
| City |
Evry |
| ZIP/Postal code |
91000 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL4346 |
URGV Arabidopsis thaliana 25K CATMA_v2.2 |
|
| Samples (12)
|
| GSM219150 |
13488968 - CMS_8_4/2_3 vs PAC_8_2/2_3 |
| GSM219151 |
13488969 - PAC_8_2/2_3 vs CMS_8_4/2_3 |
| GSM219152 |
13488970 - PPR_8_5/2_3 vs CMS_8_4/2_3 |
| GSM219153 |
13488971 - CMS_8_4/2_3 vs PPR_8_5/2_3 |
| GSM219154 |
13488972 - PAC_8_2/2_3 vs PPR_8_5/2_3 |
| GSM219155 |
13488973 - PPR_8_5/2_3 vs PAC_8_2/2_3 |
| GSM219156 |
13489240 - CMS_8_4/2_2 vs PAC_8_2/2_2 |
| GSM219157 |
13489242 - PAC_8_2/2_2 vs CMS_8_4/2_2 |
| GSM219158 |
13489243 - PPR_8_5/2_1 vs CMS_8_4/2_2 |
| GSM219159 |
13489244 - CMS_8_4/2_2 vs PPR_8_5/2_1 |
| GSM219160 |
13489245 - PAC_8_2/2_2 vs PPR_8_5/2_1 |
| GSM219161 |
13489246 - PPR_8_5/2_1 vs PAC_8_2/2_2 |
|
| Relations |
| BioProject |
PRJNA102141 |
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